Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4404 ATGGTGATCACCTCCGCTGTCACAGATCCTGAAGAACAAACACAAAGCTTGCACTCTACTTTTGCTTCCAGATATGTTCGTGACCCTATTCCCAGGTTCAAGATGCCAGAGAAGTGTATACCAAAGGATGCAGCATATCAGATCATAAACGATGAGTTGATGTTGGATGGAACACCAAGGCTTAACTTGGCATCTTTTGTGACCACTTGGATGGAGCCTGAGTGTGATAAGCTCATCATGGCTTCGCTTAACAAGAACTATGTTGACATGGATGAGTATCCTGTCACCACTGAGCTCCAGAATAGGTGCGTTAATATGATAGCACACCTATACCATGCTCCTATCGGTGATGATGAGGCTGCAGTCGGTGTCGGAACTGTCGGATCATCAGAGGCAATAATGTTGGCAGGTCTAGCTTTTAAAAGGAAATGGCAGGCAAAGAGAAAAGCAGAAGGCAAACCTTATGATAAGCCTAACATAGTTACCGGCGCTAATGTGCAGGTTTGTTGGGAGAAGTTTGCACGGTATTTCGAGGTTGAGCTTAAGGAAGTGAAACTCACAGAAGGATACTATGTGATGGACCCTGTGAAAGCAGTTGAAATGGTTGATGAGAACACCATCTGTGTGGCGGCGATTTTGGGGTCGACTCTGACCGGTGAGTTTGAGGATGTGAAACTTCTTAATGAGCTTCTTACTAAAAAGAATAAGGAGACAGGATGGAATACCCCGATTCATGTTGATGCTGCCAGCGGAGGGTTCATTGCCCCATTTCTCTACCCTTGTCTTGAGTGGGATTTTCGCTTACCATTAGTGAAGAGCATCAATGTTAGTGGTCATAAGTATGGTCTTGTCTACCCCGGTGTCGGTTGGGTTGTTTGGAGGAGTAAAGATGACTTGCCAGAGGAACTTGTTTTTCACATAAACTATCTCGGATCGGATCAGCCAACATTTACCCTCAATTTCTCCAAAGGCTCTAGTCAAATTATTGCTCAATATTACCAATTTATACGGCTTGGCACAGAGGGCTACAAAAATATCATGGAGAACTGCAGGGAGAATGCAAGAATTCTGAGGGAGGGAATCGAGAGAACAGGCCGGTTCAACATCATCTCCAAGGATGTTGGCGTGCCGCTTGTTGCCTTCTCTTTGAAAGACAGCAGCCAACACACAGTGTTTGAGGTGTCAGACCATCTGAGAAAATTTGGCTGGATAGTTCCGGCCTACACAATGCCGCCAGACGCGCAGCACATTGCAGTCCTCCGGGTGGTGATCAGGGAGGATTTCAGCCGGGGATTGGCGGAGAGACTCGTGTCCGACATAGTGAAAGTTGTGGATCTCGTGGACACACTTCCAAGCCCTCTATCAACAAAAAAGGCACATGTGGTAGCTGTTGCTAATAATGAGACAAGTGAGAAGGCTAAGAAGAGTGCATTAGAGACTCAGAAAGAGATTGCCTTGTATTGGAAGAGGCTTGTGGATGGTAAAAGAGTTGGAGCATGTTAG 1503 0.4597 MVITSAVTDPEEQTQSLHSTFASRYVRDPIPRFKMPEKCIPKDAAYQIINDELMLDGTPRLNLASFVTTWMEPECDKLIMASLNKNYVDMDEYPVTTELQNRCVNMIAHLYHAPIGDDEAAVGVGTVGSSEAIMLAGLAFKRKWQAKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLTEGYYVMDPVKAVEMVDENTICVAAILGSTLTGEFEDVKLLNELLTKKNKETGWNTPIHVDAASGGFIAPFLYPCLEWDFRLPLVKSINVSGHKYGLVYPGVGWVVWRSKDDLPEELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGTEGYKNIMENCRENARILREGIERTGRFNIISKDVGVPLVAFSLKDSSQHTVFEVSDHLRKFGWIVPAYTMPPDAQHIAVLRVVIREDFSRGLAERLVSDIVKVVDLVDTLPSPLSTKKAHVVAVANNETSEKAKKSALETQKEIALYWKRLVDGKRVGAC* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4404 500 Gene3D - 69 363 IPR015421 GO:0003824
Amo05g4404 500 Gene3D - 364 451 - -
Amo05g4404 500 Pfam Pyridoxal-dependent decarboxylase conserved domain 36 384 IPR002129 GO:0016830|GO:0019752|GO:0030170
Amo05g4404 500 Gene3D - 1 68 - -
Amo05g4404 500 PANTHER GLUTAMATE DECARBOXYLASE 3 500 - -
Amo05g4404 500 PANTHER GLUTAMATE DECARBOXYLASE 3 500 IPR010107 GO:0004351|GO:0006536|GO:0030170
Amo05g4404 500 CDD DOPA_deC_like 62 442 - -
Amo05g4404 500 SUPERFAMILY PLP-dependent transferases 14 445 IPR015424 -
Amo05g4404 500 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 19 445 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4404 Amo-Chr5 114804342 114808419 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4404 12 500 Calmodulin-binding Proteins AT3G17760 79.550 0.0 819
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4404 K01580 - gmx:100783047 910.983