Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4379 ATGTTAGCGAATAACTCTTCAGTAGCTCCAAGTGAACCATTTTCTTGTGCTGATAATAGTAATGGCACTCCAAGCAATAAAAGGAAGAGAAGACCCGCAGGAACACCAGATCCAGATGCAGAGGTGGTGTCGCTGTCGCCAAAGACGTTATTGGAATCGGATCGATATGTGTGTGAGATCTGCAACCAYGGCTTCCAAAGGGACCAGAACCTGCAGATGCATCGGAGGAGGCACAAGGTGCCGTGGAAGCTTCTAAAGAGGGAGACGCCGGTGGTCAGGAAGAGGGTCTTCGTGTGTCCGGAGCCTACTTGCCTGCACCACGACCCTTGTCACGCACTCGGAGACCTTGTTGGGATCAAGAAGCACTTCCGCCGCAAGCACAGCAACCACAAACAGTGGGTCTGCGAGCGCTGCTCCAAGGGCTACGCGGTGCAGTCCGATTACAAGGCTCACCTCAAGACCTGCGGCACTCGCGGCCACTCTTGTGATTGCGGCCGCGTCTTCTCCAGGGTGGAGAGCTTTATTGAGCATCAAGATGCTTGCAACATGGGGAGGCTTAGGACGGAATCTCATCATAATCATAATCATAATCATCAACCACCACCAACTCCAACTGCATGTTTATCAAGAACAGCTTCAAGTCCAAGCCCTTCAAGAAGTGAAACCAATTTCAGCACTGCTCCATGGCAACCAACATCATCAACAACAACAACAACAACACCAACAAGCCTTGTTGTGATCACAAAACCAATAACAACAACCACAGAACCACCTTTCTTCAACAACACTAACCCTACCCCAATTCTAGCCACTGCTGAAACATTCCTATTCAAGAAGAGTAACACCAGCAACAAACTCCATCACCCAAACTTGGATCTTCAGCTCTCCACCACCACCACCACCACCATGATGATGAACAACAACAATTCGATCCCCAATGTTGATTTAACACTATCACCAAAGAGTGATAATAATCATCATCAGCAGCTTCAAAACCAGCAGCATTCAACACAGCTGCAACTCTCCATTGGTGGAACAACCTCGTCAGACATTAGCGAGAACAATAACAAGAACGACTCATCAAACAGGAACTCGTCACCGAAAGAGAGCATCAACAGCAGCAACGAGAACAAGCATGCGACAGCAACAAGCATGGCTTTACGGGTTCAAGAACAAGCGAGGGAGCAACTAAGGTTAGCCATGGCGGAGAAAGCGTACGCAGAAGAAGCAAGGAAACAAGCAAAGAGGCAGATAGAAATGGCGGAACAAGAGTTCAACAATGCAAAGAGGATAAGGCAACAAGCGCAAGCTGAATTCGACAAAGCTTGCGCTCTCAAGGAACATGCAATGAAGAAGATAAACTCAACCATCATGCAAATCACGTGCCATTCTTGCAAGCAACACTTTCATCTTCAACCACCACCAGTATCTGCTACAGCACCACCAGATGAAAATTCCTTGGTTCTCAGTTACATGTCTTCTGGAATCACCACCGAAGGTGCTGGAGAAGTTATAGAGAACAATAATAACGATCATGATACTACTACTACTACTATTACTGATAATAATAATAATAATGGGAAGAAAGCATCTACAGCTACTAACTCTTAG 1611 0.4668 MLANNSSVAPSEPFSCADNSNGTPSNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNHGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRTESHHNHNHNHQPPPTPTACLSRTASSPSPSRSETNFSTAPWQPTSSTTTTTTPTSLVVITKPITTTTEPPFFNNTNPTPILATAETFLFKKSNTSNKLHHPNLDLQLSTTTTTTMMMNNNNSIPNVDLTLSPKSDNNHHQQLQNQQHSTQLQLSIGGTTSSDISENNNKNDSSNRNSSPKESINSSNENKHATATSMALRVQEQAREQLRLAMAEKAYAEEARKQAKRQIEMAEQEFNNAKRIRQQAQAEFDKACALKEHAMKKINSTIMQITCHSCKQHFHLQPPPVSATAPPDENSLVLSYMSSGITTEGAGEVIENNNNDHDTTTTTITDNNNNNGKKASTATNS* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4379 536 Coils Coil 397 438 - -
Amo05g4379 536 SMART c2h2final6 133 160 IPR013087 -
Amo05g4379 536 SMART c2h2final6 97 127 IPR013087 -
Amo05g4379 536 SMART c2h2final6 56 78 IPR013087 -
Amo05g4379 536 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 1 498 - -
Amo05g4379 536 MobiDBLite consensus disorder prediction 306 383 - -
Amo05g4379 536 MobiDBLite consensus disorder prediction 197 241 - -
Amo05g4379 536 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
Amo05g4379 536 MobiDBLite consensus disorder prediction 1 43 - -
Amo05g4379 536 MobiDBLite consensus disorder prediction 506 536 - -
Amo05g4379 536 MobiDBLite consensus disorder prediction 1 28 - -
Amo05g4379 536 PANTHER OS03G0310200 PROTEIN 1 498 IPR039288 GO:0009630
Amo05g4379 536 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Amo05g4379 536 MobiDBLite consensus disorder prediction 189 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4379 Amo-Chr5 114400894 114404350 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4379 336 503 C2H2 Transcription Factor Family AT1G25250 43.452 1.41e-25 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo05g4379 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4379 K25871 - gmx:100800187 634.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g4379 05 114400894 114404350 Amo15g1701 15 116641979 116645431 hybridization