Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4373 ATGTGTACTAGAGGACATTGGAGACCAGCTGAAGATGAGAAGCTTAGGGAGCTGTTTCTTGTGTGTGTCTTTAAAATGTTTGATAAGGAACATCAGACTGCAAATCATGTAATAAGGAAAAGTTGTAGGTTAAGATGGTTCAATCAATTGGACCCAAGAATAAATAGAAACCCGTTCACAGAGGAAGAAGAAGAACGGCTTTTAGCATCTCATAGTATTCATGGAAATAGATGGTCAGTGATTGCAAGACACTTCCCTGGAAGAACTGATAATGCTGTCAAGAATCATTGGCATGTGATGATGGCAAGAATACGCAGAGAAAGATCTAAAGTTTATGCAAAACGACCACTTCATCATAGAACATTTTTTTCTCCAAACCTTCAACAACAACAACAACAAGAGGATCATGATGATGAGACAACAAACTTTGACACAAAAAATAATATATCATACTGTCTTGTTGACAAGTTTCATGGAAAATATAGCTACCCTGCTTGTCTCACTTATGCTACTTTCCAACTTCCTAACAAGTTTCACTTTCAAGGTCCAACTTCTTGTGCTACATTGCTTCAAGAAAGAAGTCAATCAATTGAGTTCTATGACTTTCTTCGAGTAAACACAGATTCCAACAAGAGTGAAGTGAGTAACAACAATGGCAAAAAGGAAGATGAAGAAGTGAATCAAGATCCTGTGGGGCATCACAGCAAGGATGGAATTCCATTCATTGATTTTTTGTCTACTCAAAGTTCCTAA 753 0.3718 MCTRGHWRPAEDEKLRELFLVCVFKMFDKEHQTANHVIRKSCRLRWFNQLDPRINRNPFTEEEEERLLASHSIHGNRWSVIARHFPGRTDNAVKNHWHVMMARIRRERSKVYAKRPLHHRTFFSPNLQQQQQQEDHDDETTNFDTKNNISYCLVDKFHGKYSYPACLTYATFQLPNKFHFQGPTSCATLLQERSQSIEFYDFLRVNTDSNKSEVSNNNGKKEDEEVNQDPVGHHSKDGIPFIDFLSTQSS* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4373 250 PANTHER MYB-RELATED PROTEIN A-LIKE 1 249 - -
Amo05g4373 250 SUPERFAMILY Homeodomain-like 39 105 IPR009057 -
Amo05g4373 250 MobiDBLite consensus disorder prediction 215 232 - -
Amo05g4373 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Amo05g4373 250 Gene3D - 4 55 - -
Amo05g4373 250 Gene3D - 57 140 - -
Amo05g4373 250 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Amo05g4373 250 SMART sant 3 52 IPR001005 -
Amo05g4373 250 SMART sant 55 103 IPR001005 -
Amo05g4373 250 MobiDBLite consensus disorder prediction 209 239 - -
Amo05g4373 250 MobiDBLite consensus disorder prediction 123 142 - -
Amo05g4373 250 PANTHER MYB PROTEIN-RELATED 1 249 - -
Amo05g4373 250 Pfam Myb-like DNA-binding domain 56 99 IPR001005 -
Amo05g4373 250 CDD SANT 58 101 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4373 Amo-Chr5 114260379 114263735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4373 1 250 MYB Transcription Factor Family AT1G17950 46.275 5.26e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo05g4373 Myb_DNA-binding 2.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4373 K09422 - gmx:100811746 276.559