Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4340 ATGGGTGAGAATGTGATTCCTGATCTATCACTGCAGATAAGCCTGCCAAAGAGTGCTCCACCATCAATATGCAATAATGAAGAAGAAGGAGATTGTGGAGGGTTTGATATATGGAGAAGTAGCACTACTACTAGTGATGGTGCTGAAAAATCACACAGTGATGGTTCCATTTCAATCCCTACTACTCTTCTTCATCATCATAAGAACATGGAGACACAACTCTCTTTAGCAGCACCTACAACCCCAACCCCTTCTGAAGCTGAAAGCCCTTGGAACAAATCATCATCATCATCAGAGCAAGTAGTAATTAGGCCTATCAATGGAATCCCTCTTTACAACAACAACAACACTCCTTCTTCGCCACTTTCAAGGTTTAATAATGCTATAACTATGGAGAGTCTAAGAACCCTTAATCACCATCACTTATTTGGGGTTATTGGGGGTGCTAACAACAACACTGACTTCACAAACGGGTTTGTGATGAGGTCTAGAATGTTCCCATCATCAACAACAACAACAACAAGGATGATGATTCATAGCAGCAAGAGGAACATGAGGGCTCCAAGAATGCGCTGGACTACCTCCCTCCATGCCCGATTTGTTCACGCTGTTCAACTCCTTGGCGGCCATGAAAGAGCTACTCCAAAGTCAGTTCTGGAACTCATGGATGTCAAAGATCTAACACTCGCTCATGTCAAGAGTCACTTGCAGATGTATAGAACTGTTAAGAATACTGACAAGCCAGCAGCTTCCTCAGCATCAGATGGAGATGAAGATTTCATGTCCCTAGCATCACCCATTAGTCAAAATAAGAACTTTTTACCAAATCAAAGAGGGCCCCCAAATAATAATAATGCATCTCTAGATCAAGATTTGGGATACAACACCACTACTGCTACTACTTGCAGCAATAAAAATCTATGGGGTAATTCTTCTTCCAGTAGAGAAGCATGGATACAAGCCAACGAGCGTAGTCCAGAAACCCTATCATCTCAACACATTATGGGGAAGCTCTCCGAGGGAAGCAACCATATACAATCAAGAAGCTTCAAGGATCAAAATAATTTAGATTGTCAGAATAATCCAAGCTTGGAATTCACCTTAGGGAGATGA 1113 0.4196 MGENVIPDLSLQISLPKSAPPSICNNEEEGDCGGFDIWRSSTTTSDGAEKSHSDGSISIPTTLLHHHKNMETQLSLAAPTTPTPSEAESPWNKSSSSSEQVVIRPINGIPLYNNNNTPSSPLSRFNNAITMESLRTLNHHHLFGVIGGANNNTDFTNGFVMRSRMFPSSTTTTTRMMIHSSKRNMRAPRMRWTTSLHARFVHAVQLLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKNTDKPAASSASDGDEDFMSLASPISQNKNFLPNQRGPPNNNNASLDQDLGYNTTTATTCSNKNLWGNSSSSREAWIQANERSPETLSSQHIMGKLSEGSNHIQSRSFKDQNNLDCQNNPSLEFTLGR* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4340 370 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 5 126 IPR044847 GO:0000976|GO:0006355|GO:0010158
Amo05g4340 370 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 152 370 IPR044847 GO:0000976|GO:0006355|GO:0010158
Amo05g4340 370 MobiDBLite consensus disorder prediction 35 59 - -
Amo05g4340 370 SUPERFAMILY Homeodomain-like 185 242 IPR009057 -
Amo05g4340 370 Gene3D - 187 244 - -
Amo05g4340 370 Pfam Myb-like DNA-binding domain 189 240 IPR001005 -
Amo05g4340 370 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 5 126 - -
Amo05g4340 370 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 152 370 - -
Amo05g4340 370 MobiDBLite consensus disorder prediction 269 293 - -
Amo05g4340 370 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 188 241 IPR006447 GO:0003677
Amo05g4340 370 MobiDBLite consensus disorder prediction 76 99 - -
Amo05g4340 370 MobiDBLite consensus disorder prediction 37 59 - -
Amo05g4340 370 MobiDBLite consensus disorder prediction 243 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4340 Amo-Chr5 113681586 113690600 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4340 104 370 G2-like Transcription Factor Family AT5G16560 41.613 1.85e-48 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Amo05g4340 Myb_DNA-binding 1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4340 - - aip:107644092 701.049