Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4329 ATGTTTCTTGGATGCCAAACTTTTCGATTGCATGGTAATATGGAACATGAAGGCCGAAGATCTACTTTTCAGGCTTTTAAAACTGAGAAATATGCTTTGCTTTTGTCCACTCATGTTTCTACTAGAGGCCTGGATTTTCCAAAAGTTCAATGCATTATACAGTATGATTCTCCTCGGGAAGCTAATGAATATGTGCACAGAGTTGGTAGAACTACTCGTTTGGGTGAAAGGGGAGAGTCCTTGTTATTTCTGCAACCAGTTGAAATAGATTATTTACAAGACTTGGAGAAACATGGTGTTTCACTAGCAGAGTATCCTCTTCTCAAAGTGTTGGATAATTTTACATTACACGGACAGAACAAACAAGTAAAGAAGTCTGTTTTCATCGACTTGCATCCTTGGGTCCTTTGTCTCCAGAAGGRACTTGAATCATTCATCATTTRCAAGCCCAAGATGAAAGAACTTGCTAGGAAGGGATTTTGCTCTTGGGTCCGTGCTTACAGAGCACATCGTGGTGACCTAAAAAGAGTATTTATGATCAAGAAACTTCACTTGGGGCACGTGGCCAAAAGCTTTGTGTTGAAACAACAACCGTCCTTAGTTGGACAATCCTTCCAAAAGCAAAATAAAAAGAGAAAGAGATTTGAGAAGAAAAGTGGGATATCAAAAAAGAGAAAAGTTGCTAGAGTGACTTAA 696 0.3879 MFLGCQTFRLHGNMEHEGRRSTFQAFKTEKYALLLSTHVSTRGLDFPKVQCIIQYDSPREANEYVHRVGRTTRLGERGESLLFLQPVEIDYLQDLEKHGVSLAEYPLLKVLDNFTLHGQNKQVKKSVFIDLHPWVLCLQKXLESFIIXKPKMKELARKGFCSWVRAYRAHRGDLKRVFMIKKLHLGHVAKSFVLKQQPSLVGQSFQKQNKKRKRFEKKSGISKKRKVARVT* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4329 231 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 122 IPR001650 -
Amo05g4329 231 Pfam Domain of unknown function (DUF4217) 139 199 IPR025313 -
Amo05g4329 231 Pfam Helicase conserved C-terminal domain 4 75 IPR001650 -
Amo05g4329 231 CDD SF2_C_DEAD 3 84 - -
Amo05g4329 231 Gene3D - 1 228 IPR027417 -
Amo05g4329 231 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 98 IPR027417 -
Amo05g4329 231 SMART helicmild6 1 75 IPR001650 -
Amo05g4329 231 PANTHER ATP-DEPENDENT RNA HELICASE DDX31-RELATED 7 229 - -
Amo05g4329 231 PANTHER RNA HELICASE 7 229 - -
Amo05g4329 231 SMART DUF4217_3 137 202 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4329 Amo-Chr5 113496473 113498979 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4329 10 107 Eukaryotic Initiation Factors Gene Family AT3G19760 31.313 1.08e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4329 K14806 - gmx:100805157 369.777