Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4325 ATGAGCGTTCAAGCTCAGAGAGACCGGAGGAGTAGGTCCAGAGTTCCGCCGCAAGGTGGTCCACGTCAAGAATGGGTTCCCAGAGGATCATCTACCACTACTGCTGTTCAACCATCAAATTTGCAATCTGATCAAAATGCTGATTCTGCTGGTAGTTCCAGTAATGGTGCTGATGCTGTTCCTGTTGCTGCTGCCACCGCCCCTGTTTCCACTGCCCCACCTGCAGTGGTTCGCCATAATAGAAGCAATCACGGGGCTGTGAATCAGAGGAGGGAAGTGGAGAAAGGGAGGAGTAGTGGGAATCAGGCTGGGAAGGGGTTGAAGATGAGGGACTCTAGTTTGCCTCAGTTGGTGCAGGAGATTCAGGAGAAGCTCATGAAAGGGACTGTGGAATGCATGATTTGTTATGAAATGGTACGGAGGTCTGCACTTGTTTGGTCTTGTTCGAGCTGCTACTCTATCTTTCACCTCAACTGCATCAAGAAGTGGGCTCGTGCGCCTACGTCGATTGATTTGTCAGCTGAGAAGAATCAGGGCTTTAATTGGCGGTGTCCTGGTTGTCAATCGGTGCAGCTTACTTCGTCAAAGGAGATTCGGTATGTTTGCTTTTGTGGGAAAAGGGTGGACCCTCCATCTGATTTGTATTTGACGCCACATTCGTGTGGAGAACCATGTGGGAAGCCTCTTGAGAAGGAGGTGTTCTCTAATGGTGGGAGTAAGGAAGATCTTTGCCCTCATGTTTGTGTCTTGCAATGCCATCCTGGTCCTTGTCCTCCGTGTAAAGCATTTGCCCCTCCGCGCTTATGTCCATGTGGGAAGAAGACAATTACCACCCGTTGTTTTGATAGGCAATCTGTTCTTACATGTGGCCAGCGGTGTGAGAAGCTTCTCGAGTGTGGGCGTCACCGATGTGAACGCATTTGTCATGTCGGAGCTTGTGACCCATGTCAGGTTTTGATCAATGCCTCTTGCTTTTGTAGTAAGAAGGTAGAGGTTCTTCCATGTGGGGACATGACTATGAAGGGTGAATTCACAGCAGAAGCTGGAGTTTTTACCTGTGGTTCCAATTGTGGAAGGAAACTTAGTTGTGGTAATCACATGTGCAATGAGATTTGTCATCCAGGAAGTTGCGGGGAGTGTGATTTGTTACCAAGGCGTGTTAACACATGCTGTTGTGGGAAAACAAAATTGGATGAGGAACGCAAAAGTTGTTTGGACCCAATACCTACCTGCTCGCAAGTTTGTGCCAAATCACTTCCTTGTGGCACACATCATTGTAAAGAGGTGTGTCATGTTGGGGATTGTCCTCCATGCTTGGTTCTTGTGTCCCAGAAGTGCCGTTGTGGTTCAACATCCCGCATCGTGGAATGCTATAAGACAACAGCGGAGAATGAGAAGTTTACTTGTGAAAAGCCTTGTGGAAGAAAAAAGAATTGTGGAAGACATCGGTGTAGTGAACGGTGTTGTCTACTTTCTAATCCCAATAACAATTTAAGTAGTGAATGGGATCCACACTTCTGTTCGATGCCATGTGAAAAGAAGTTAAGATGTGGCCAGCATGCTTGTGAATCACTATGTCACAGTGGCCATTGCCCACCTTGTCTTGAAACCATCTTTACAGATCTGACATGTGCTTGTGGTAGGACTTCAATCCCTCCTCCACTCCCTTGTGGTACGCCACCTCCTTCATGCCAGCTTCCATGTTCAGTTCCTCAGCCTTGTGGCCATATAGCCTTGCACAGTTGCCACTTTGGAGACTGCCCTCCTTGTTCAGTTCCTGTAGCAAAAGAATGTATTGGTGGGCATGTTGTTCTTAGGAACATTCCTTGTGGTTCAAAGGACATTAGATGCAATAAGCTATGTGGGAAGACCAGACAATGTGGCTTACATGCATGTGGGAGAACTTGTCACCCCCCTCCTTGTGATAATCTATCTTGCGGTGTGCAAGGGTTACCAGCGCCTTGTGGGCAAACGTGTGGAGCTCCTAGAAGAGACTGTCGTCATACATGTACAGCTCCGTGTCACCCATCCACTCCATGCCCAGACGTAAGATGTGAGTTTCCTGTTACAATTACCTGTTCTTGTGGCCGTATAACTGCAAATGTTCCATGTGATGCTGGTGTCAGCAGTAGTAATTATAATGCTGATGCTGTACATGAAGCTTCCATCACTCAAAAATTGCCTATCCCACTACAACCAGTTGATCCAAATGGCAAAAAAGTTCCCCTTGGACAAAGAAAGCTGATGTGCGATGATGAATGTGCTAAGTTAGAGCGCAAGAGGGTTCTTGCTGATGCTTTTGATATTACTACTCCAAATCTTGATTCTCTCCATTTTGGCGACAATTCTGTTGATTTGATTTCTGATTTGTACCGGCGTGATCCTAAATGGGTTATTTCTGTTGAGGAGAGATGCAAATTTTTAGTGCTTGGCAAAAGCAGAAGCACAACTCATGGTTTAAAGGTCCATGTTTTCTGTCCTATGCTGAAGGAGAAAAGAGATGCAGTGAGGGTAATTGCAGATAGATGGAAGCTTGCTGTGAGTGCTGCTGGTTGGGAGCCGAAGCGTTTTATCGTAATTCATGTTACCTCAAAATCAAAAGCCCCAACCCGTGTGCTAGGGGTTAAGGGTACTCCAACTATAAGTGCACCCCTTCCTCCTGCATTTGATCACTTGGTAGACATGGACCCTAGGCTTGTTGTTTCATTCCCTGACTTACCAAGGGAGGCTGATATTAGTGCTTTGGTGTTGAGATTTGGTGGCGAGTGTGAGCTTGTTTGGCTGAATGACAAAAATGCCTTGGCTGTTTTTCATGACCCTGCTCGAGCTGCAACGGCAATGAGGAGGTTAGATCATGGTACATTTTATCAGGGAGCTGTTTCGGTTGTGCCCAATGTTGGGGCAACTACCACATCTTCAACTACAGGTGCCTGGGGAGCGGGGACAARGAAAGAAGGAGCACTATCTGTGTTGAAAGGTAATGCATGGAAGAAAGCTGTGGTRCAAGAGTCCAGTTGGAGAGAAGATTCTTGGGGCGATGAAGAATGGACTACTGGATCTGCTAATGTCCAYCAATCTGCTTGGAAAAAAGAAGCACCAATAGCTGCTTCTTTTAACCGTTGGAATTTATTAGACCATGAGTCAGGTCAAAGTTCATCTTCTACAAATGTGAAAAAAGCAGAAGCTTCTGGGAAAAACACTGAAAGCAGTGCTGTCTTGAGGTTGGAGTCTCATGCAGCTGGTTCAAATGAACAAGGGAAACTTGGTGGGAACTTGGATGCAACTGAAGCTTCTGAAGTAGTAGATGATTGGGAGAAGGCTTATGAATGA 3330 0.4634 MSVQAQRDRRSRSRVPPQGGPRQEWVPRGSSTTTAVQPSNLQSDQNADSAGSSSNGADAVPVAAATAPVSTAPPAVVRHNRSNHGAVNQRREVEKGRSSGNQAGKGLKMRDSSLPQLVQEIQEKLMKGTVECMICYEMVRRSALVWSCSSCYSIFHLNCIKKWARAPTSIDLSAEKNQGFNWRCPGCQSVQLTSSKEIRYVCFCGKRVDPPSDLYLTPHSCGEPCGKPLEKEVFSNGGSKEDLCPHVCVLQCHPGPCPPCKAFAPPRLCPCGKKTITTRCFDRQSVLTCGQRCEKLLECGRHRCERICHVGACDPCQVLINASCFCSKKVEVLPCGDMTMKGEFTAEAGVFTCGSNCGRKLSCGNHMCNEICHPGSCGECDLLPRRVNTCCCGKTKLDEERKSCLDPIPTCSQVCAKSLPCGTHHCKEVCHVGDCPPCLVLVSQKCRCGSTSRIVECYKTTAENEKFTCEKPCGRKKNCGRHRCSERCCLLSNPNNNLSSEWDPHFCSMPCEKKLRCGQHACESLCHSGHCPPCLETIFTDLTCACGRTSIPPPLPCGTPPPSCQLPCSVPQPCGHIALHSCHFGDCPPCSVPVAKECIGGHVVLRNIPCGSKDIRCNKLCGKTRQCGLHACGRTCHPPPCDNLSCGVQGLPAPCGQTCGAPRRDCRHTCTAPCHPSTPCPDVRCEFPVTITCSCGRITANVPCDAGVSSSNYNADAVHEASITQKLPIPLQPVDPNGKKVPLGQRKLMCDDECAKLERKRVLADAFDITTPNLDSLHFGDNSVDLISDLYRRDPKWVISVEERCKFLVLGKSRSTTHGLKVHVFCPMLKEKRDAVRVIADRWKLAVSAAGWEPKRFIVIHVTSKSKAPTRVLGVKGTPTISAPLPPAFDHLVDMDPRLVVSFPDLPREADISALVLRFGGECELVWLNDKNALAVFHDPARAATAMRRLDHGTFYQGAVSVVPNVGATTTSSTTGAWGAGTXKEGALSVLKGNAWKKAVVQESSWREDSWGDEEWTTGSANVHQSAWKKEAPIAASFNRWNLLDHESGQSSSSTNVKKAEASGKNTESSAVLRLESHAAGSNEQGKLGGNLDATEASEVVDDWEKAYE* 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4325 1109 MobiDBLite consensus disorder prediction 1045 1073 - -
Amo05g4325 1109 SMART znfxneu3 517 536 IPR000967 GO:0005634|GO:0008270
Amo05g4325 1109 SMART znfxneu3 666 687 IPR000967 GO:0005634|GO:0008270
Amo05g4325 1109 SMART znfxneu3 627 648 IPR000967 GO:0005634|GO:0008270
Amo05g4325 1109 SMART znfxneu3 299 318 IPR000967 GO:0005634|GO:0008270
Amo05g4325 1109 SMART znfxneu3 574 592 IPR000967 GO:0005634|GO:0008270
Amo05g4325 1109 SMART znfxneu3 479 513 IPR000967 GO:0005634|GO:0008270
Amo05g4325 1109 SMART znfxneu3 363 382 IPR000967 GO:0005634|GO:0008270
Amo05g4325 1109 SMART znfxneu3 244 262 IPR000967 GO:0005634|GO:0008270
Amo05g4325 1109 SMART znfxneu3 421 440 IPR000967 GO:0005634|GO:0008270
Amo05g4325 1109 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 81 1106 IPR034078 GO:0003700
Amo05g4325 1109 SUPERFAMILY RING/U-box 122 191 - -
Amo05g4325 1109 CDD NF-X1-zinc-finger 655 704 - -
Amo05g4325 1109 CDD NF-X1-zinc-finger 411 459 - -
Amo05g4325 1109 MobiDBLite consensus disorder prediction 1 109 - -
Amo05g4325 1109 CDD NF-X1-zinc-finger 221 282 - -
Amo05g4325 1109 CDD NF-X1-zinc-finger 289 337 - -
Amo05g4325 1109 Pfam NF-X1 type zinc finger 659 684 IPR000967 GO:0005634|GO:0008270
Amo05g4325 1109 Pfam NF-X1 type zinc finger 363 380 IPR000967 GO:0005634|GO:0008270
Amo05g4325 1109 Pfam NF-X1 type zinc finger 479 489 IPR000967 GO:0005634|GO:0008270
Amo05g4325 1109 Pfam NF-X1 type zinc finger 246 261 IPR000967 GO:0005634|GO:0008270
Amo05g4325 1109 Pfam NF-X1 type zinc finger 627 646 IPR000967 GO:0005634|GO:0008270
Amo05g4325 1109 Pfam NF-X1 type zinc finger 517 534 IPR000967 GO:0005634|GO:0008270
Amo05g4325 1109 Pfam NF-X1 type zinc finger 421 438 IPR000967 GO:0005634|GO:0008270
Amo05g4325 1109 Pfam NF-X1 type zinc finger 581 591 IPR000967 GO:0005634|GO:0008270
Amo05g4325 1109 Pfam NF-X1 type zinc finger 299 317 IPR000967 GO:0005634|GO:0008270
Amo05g4325 1109 MobiDBLite consensus disorder prediction 1045 1109 - -
Amo05g4325 1109 CDD NF-X1-zinc-finger 507 550 - -
Amo05g4325 1109 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 81 1106 - -
Amo05g4325 1109 MobiDBLite consensus disorder prediction 25 56 - -
Amo05g4325 1109 ProSiteProfiles Zinc finger RING-type profile. 132 188 IPR001841 -
Amo05g4325 1109 CDD RING-CH-C4HC3_NFX1 131 188 - -
Amo05g4325 1109 CDD NF-X1-zinc-finger 353 396 - -
Amo05g4325 1109 CDD NF-X1-zinc-finger 564 612 - -
Amo05g4325 1109 ProSiteProfiles Zinc finger PHD-type profile. 129 190 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4325 Amo-Chr5 113424143 113428339 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Amo05g4325 zf-NF-X1 16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4325 K12236 - zju:107419567 1752.26