Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4309 ATGTTGTCATCCTCAACCTCAAGAATCACTTTCATTTTTAGGTATTCTCTTCTCCAAATCCCTAATTTTGTTTCCTTCCCTTCCTCTTCATCTTCATTCTCATCCCTTCACTCTCATTCTGTGCCCCCATCCACTCGCCAAGTTGATGAAGCTGTTGATTCCTTCACTCGCATGCTCTCTATGCGTCGTACTCCTCCCGTCATCCAATTCACCAAGATTTTGGGATCTCTTGCCAAGACCAACCATTTCCCCACCGCCGTTTCCCTTTTTCAGCAATTGCAAGCCAGGGGAATTGCGCCCAGCATAGTCACTTTGAATATCTTAATCAATTGTTGCTGCGGCATGGGTCGTATGACGCTTGCTTCCTCTGTATTGGCCAAGATTTTCAGAATGGATTATCAACCTAATACGGTAACATTCACAACAATCCTGAAAGGYCTCTKTCTCTWTGGTAGTGTTGAAAARGCAGTGCGCTTTCATGACAGAGTGWTGGCTCATGGATTTCAWTTYRAYCAAGTCACTTATGGGACGTTGATCAATGGWCTCTGTAAGACCGGACACACATCAGCTGCTATTCAAGTGTTGAGAAAGATCCCACGGTATGGCATTGCTCCTGATGTCTTCATCTACAACACAATTATTGATAGCCTCTGCAAGGATACACTTGTGAGTCAGGCTTTTCATTTATACTCTGGAATGCTTGCTAAGGGAATTTCTCCCGATGTTATCACATACAATTCTCTCATTTTTGGATTGTGTCTTGTGGGTCAATTTAAGGAAGCCGTTGATATACTAAATCATATGATGCTTAAAAACATTACTCCTAATGTTTATACCTATACTACTTTGATTGATGGGCTATGCAAGGAAGGAAAGATCAAAGATGCTAAGAGTGTATTGGCTGTAATGGCAAAACGTGGTGTGAAACCAAATGTAGTTACTTATAACAGCCTAATGGATGGATATTGTTTGGTTAATCAGGTAAATAAGGCAAAATATGTATTCAACACAATGGCCCAAAGTAGAGTGTCACTTGATGTTCAAAGTTACAATATCATGATTAATGGCTTGTGCAAAAGTAAAATGGTGGATGAAGCCTTGAATCTTTTTGAAGAAATGCGTCGTAGGTACTTGGTTCCAAACACGGTAACTTACAACACTCTTATTGATGGCTTGAGCAAATCAAAGAGAATCTCTTGTGCTTTGGAGCTTCTTGTCAAGATGCACGAAGGAGGTCCACCCGCTAATGTAGTCACTTACAATTCCTTGTTGGATGGGATGTTCAATATCAAACAAGTTGACAAGGCACTTATGTTATTCAAGCAAATGAAAGAGAGTGGCATTGATCCAAATATAGTCACGTATAGTATACTTATTGATGGCCTATGCAAAGAGGAAGATACTGTTGAGATGGCCTCCGATACTGCCCGAGGAATAAACCATTTGCACAACTGCACTCCAGTGATTGTACACCATGATTTGAAGTCACTAAATCTTCTTGTTGATAAAAATTGGGTTGTGAAGGTGTCAACTATAATTGTCATGATTGAATTTTCTTGA 1560 0.4 MLSSSTSRITFIFRYSLLQIPNFVSFPSSSSSFSSLHSHSVPPSTRQVDEAVDSFTRMLSMRRTPPVIQFTKILGSLAKTNHFPTAVSLFQQLQARGIAPSIVTLNILINCCCGMGRMTLASSVLAKIFRMDYQPNTVTFTTILKGLXLXGSVEKAVRFHDRVXAHGFXFBQVTYGTLINGLCKTGHTSAAIQVLRKIPRYGIAPDVFIYNTIIDSLCKDTLVSQAFHLYSGMLAKGISPDVITYNSLIFGLCLVGQFKEAVDILNHMMLKNITPNVYTYTTLIDGLCKEGKIKDAKSVLAVMAKRGVKPNVVTYNSLMDGYCLVNQVNKAKYVFNTMAQSRVSLDVQSYNIMINGLCKSKMVDEALNLFEEMRRRYLVPNTVTYNTLIDGLSKSKRISCALELLVKMHEGGPPANVVTYNSLLDGMFNIKQVDKALMLFKQMKESGIDPNIVTYSILIDGLCKEEDTVEMASDTARGINHLHNCTPVIVHHDLKSLNLLVDKNWVVKVSTIIVMIEFS* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4309 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 240 IPR002885 -
Amo05g4309 519 Pfam PPR repeat family 416 464 IPR002885 -
Amo05g4309 519 Pfam PPR repeat family 240 289 IPR002885 -
Amo05g4309 519 Pfam PPR repeat family 346 394 IPR002885 -
Amo05g4309 519 Pfam PPR repeat family 67 113 IPR002885 -
Amo05g4309 519 Pfam PPR repeat family 135 184 IPR002885 -
Amo05g4309 519 SUPERFAMILY Protein kinase-like (PK-like) 457 510 IPR011009 -
Amo05g4309 519 SUPERFAMILY HCP-like 248 452 - -
Amo05g4309 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 416 450 IPR002885 -
Amo05g4309 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
Amo05g4309 519 Pfam PPR repeat 202 233 IPR002885 -
Amo05g4309 519 Pfam PPR repeat 306 338 IPR002885 -
Amo05g4309 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Amo05g4309 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 381 415 IPR002885 -
Amo05g4309 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 346 380 IPR002885 -
Amo05g4309 519 TIGRFAM PPR: pentatricopeptide repeat domain 349 381 IPR002885 -
Amo05g4309 519 TIGRFAM PPR: pentatricopeptide repeat domain 243 277 IPR002885 -
Amo05g4309 519 TIGRFAM PPR: pentatricopeptide repeat domain 173 207 IPR002885 -
Amo05g4309 519 TIGRFAM PPR: pentatricopeptide repeat domain 418 452 IPR002885 -
Amo05g4309 519 TIGRFAM PPR: pentatricopeptide repeat domain 383 412 IPR002885 -
Amo05g4309 519 TIGRFAM PPR: pentatricopeptide repeat domain 209 242 IPR002885 -
Amo05g4309 519 TIGRFAM PPR: pentatricopeptide repeat domain 103 137 IPR002885 -
Amo05g4309 519 TIGRFAM PPR: pentatricopeptide repeat domain 313 346 IPR002885 -
Amo05g4309 519 TIGRFAM PPR: pentatricopeptide repeat domain 278 312 IPR002885 -
Amo05g4309 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 275 IPR002885 -
Amo05g4309 519 ProSiteProfiles Protein kinase domain profile. 322 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4309 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 136 170 IPR002885 -
Amo05g4309 519 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 39 469 - -
Amo05g4309 519 Gene3D Tetratricopeptide repeat domain 410 476 IPR011990 GO:0005515
Amo05g4309 519 Gene3D Tetratricopeptide repeat domain 129 198 IPR011990 GO:0005515
Amo05g4309 519 Gene3D Tetratricopeptide repeat domain 199 268 IPR011990 GO:0005515
Amo05g4309 519 Gene3D Tetratricopeptide repeat domain 341 409 IPR011990 GO:0005515
Amo05g4309 519 Gene3D Tetratricopeptide repeat domain 26 128 IPR011990 GO:0005515
Amo05g4309 519 Gene3D Tetratricopeptide repeat domain 269 340 IPR011990 GO:0005515
Amo05g4309 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 101 135 IPR002885 -
Amo05g4309 519 Pfam Protein tyrosine and serine/threonine kinase 365 510 IPR001245 GO:0004672|GO:0006468
Amo05g4309 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
Amo05g4309 519 PANTHER OS10G0495100 PROTEIN 39 469 - -
Amo05g4309 519 ProSitePatterns Serine/Threonine protein kinases active-site signature. 489 501 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4309 Amo-Chr5 113023183 113026182 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4309 14 480 Glycosyltransferase AT1G05670 26.511 6.76e-54 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Amo05g4309 PK_Tyr_Ser-Thr 1.2e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4309 - - ahf:112803886 719.924