Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4308 CCAAGTATTGAAGTCCTGACCTCACATGAGGAGCCGAAAAACGTTGAAAACCTTCATTTCTCATCCAACCGACTCCGAAAAACTCTTGACTATATAAACAAACAAACGCACACCAAAGTGAAGGGAAGGAAAACACTCTTCCTTGCACAAAATCCACACATACAGGCACACCAAAACGACACACACCACATCGTCGTTTCATCCTCCCTCTTCTCCCTCCATCGCCAGCTCAGAGAGACCGGAGGAGTAGGTCCAGAGTTCCGCCGCAAGGTGGTCCGCGTCAAGAATGGGTTCCCAGAGGATCATCTACCACTACTGCTAAGCAATCACGGGGCTGTGAATCAGAGGAGGGAAGTGGAGAAAGGGAGGAGTAGTGGGAATCAGGCTGGGAAGGGGTTGAAGATGAGGGACTCTAGTTTGCCACAGTTGGTGCAGGAGATTCAGGAGAAGCTCATGAAAGGGACTGTGGAATGCATGATTTGTTATGAAATGGTACGGAGGTCTGCCCTTGTTTGGTCTTGTTCGAGCTGCTACTCTATCTTTCACCTCAACTGCATCAAGAAGTGGGCTCGTGCGCCTACGTCGATTGATTTGTCAGCTGAGAAGAATCAGGGCTTTAATTGGCGGTGTCCTGGTTGTCAATCGGTGCAGCTTACTTCGTCAAAGGAGATTCGGTATGTTTGCTTTTGTGGGAAAAGGGTGGACCCTCCATCTGATTTGTATTTGACGCCACATTCGTGTGGAGAACCATGTGGGAAGCCTCTTGAGAAGGAGGTGTTCTCTAATGGTGGGAGTAAGGAAGATCGTTGCCCTCATGTTTGTGTCTTGCAATGCCATCCTGGTCCTTGTCCTCCATGTAAAGCGTTTGCCCCTCCGCGCTTATGTCCATGTGGGAAGAAGACAATTACCACCCGTTGTTTTGATAGGCAATCTGTTCTTACATGTGGCCAGCGGTGTGAGAAGCTTCTCGAGTGTGGGCGTCACCGATGTGAACGCATTTGTCATGTCGGAGCTTGTGACCCATGTCAGGTTTTGATCAATGCCTCTTGCTTTTGTAGTAAGAAGGTAGAGGTTCTTCCATGTGGGGACATGACTATGAAGGGTGAATTCACAGCAGAAGCTGGAGTTTTTACCTGTGGTTCCAATTGTGGAAGGGAACTTAGTTGTGGTAATCACATGTGCAATGAGATTTGTCATCCAGGAAGTTGCGGGGAATGTGATTTGTTACCAAGGCGTGTTAACACATGCTGCTGTGGGAAAACAAAATTGGATGAGGAACGCAAAAGTTGTTTGGACCCAATACCTACCTGCTCACAAGTTTGTGCCAAATCACTTCCTTGTGGCACACATCATTGTAAAGAGGTGTGTCATGTTGGGGATTGTCCTCCATGCTTGGTTCTTGTGTCCCAGAAGTGTCGTTGTGGTTCAACATCCCGCATCGTGGAATGCTATAAGACAACAGCGGAGAATGAGAAGTTTACTTGTGAAAAGCCTTGTGGAAGAAAAAAGAATTGTGGAAGACATCGGTGTAGTGAACGGTGTTGTCTACTTTCTAATCCCAATAACAATTTAAGTAGTGAATGGGATCCACACTTCTGTTCGATGCCATGTGAAAAGAAGTTAAGATGTGGCCAGCATGCTTGTGAATCACTATGTCACAGTGGCCATTGCCCACCTTGTCTTGAAACCATCTTTACAGATCTGACATGTGCTTGTGGTAGGACTTCAATCCCTCCTCCACTCCCTTGTGGTACGCCACCTCCTTCATGCCAGCTTCCATGTTCAGTTCCTCAGCCTTGTGGCCATATAGCCTTGCACAGTTGCCACTTTGGAGACTGCCCTCCTTGTTCAGTTCCTGTAGCAAAAGAATGTATTGGTGGGCATGTTGTTCTTAGGAACATTCCTTGTGGTTCAAAGGACATTAGATGCAATAAGCTATGTGGGAAGACCAGACAATGTGGCTTACATGCATGTGGGAGAACTTGTCACCCCCCTCCTTGTGATAATCTATCTTGCAGTGTGCAAGGGTTACCAGCGCCTTGTGGGCAAACGTGTGGAGCTCCTAGAAGAGACTGTCGTCATACATGTACAGCTCCGTGTCACCCGTCCACTCCATGCCCAGACGTAAGATGTGAGTTTCCTGTTACAATTACCTGTTCTTGTGGCCGTATAACTGCAAATGTTCCATGTGATGCTGGTGTCAGCAGTAGTAATTATAATGCTGATGCTGTACATGAAGCTTCCATCACCCAAAAATTGCCTATCCCACTACAACCAGTTGATCCAAATGGCAAAAAAGTTCCCCTTGGACAAAGAAAGCTGATGTGCGATGATGAATGTGCTAAGTTAGAGCGCAAGAGGGTTCTTGCTGATGCTTTTGATATTACTACTCCAAATCTTGATTCTCTCCATTTTGGCGACAATTCTGTTGATTTGATTTCTGATTTGTACCGGCGTGATCCTAAATGGGTTATTTCTGTTGAGGAGAGATGCAAATTTTTAGTGCTTGGCAAAAGCAGAAGCACAACTCATGGTTTAAAGGTCCATGTTTTCTGTCCTATGCTGAAGGAGAAAAGAGATGCAGTGAGGGTAATTGCAGATAGATGGAAGCTTGCTGTGAGTGCTGCTGGTTGGGAGCCAAAGCGTTTTATCGTAATTCATGTTACCTCAAAATCAAAAGCCCCAACCCGTGTGCTAGGGGTTAAGGGTACTCCAACTATAAGTGCACCCCTTCCTCCTGCATTTGATCACATGGTAGACATGGACCCTAGGCTTGTTGTTTCATTCCCTGACTTACCAAGGGAGGCTGATATTAGTGCTTTGGTGTTGAGATTTGGTGGCGAGTGTGAGCTTGTTTGGCTGAATGACAAAAATGCCTTGGCTGTTTTTCATGACCCTGCTCGAGCTGCAACGGCAATGAGGAGGTTAGATCATGGTACATTTTATCAGGGAGCTGTTTCGGTTGTGCCCAATGTTGGGGCAACTACCACATCTTCAACTACAGGTGCCTGGGGAGCGGGGACAACGAAAGAAGGAGCACTATCTGTGTTGAAAGGTAATGCATGGAAGAAAGCTGTGGTCCAAGAGTCCAGTTGGAGAGAAGATTCTTGGGGCGATGAAGAATGGACTACTGGATCTGCTAATGTCCAACAATCTGCTTGGAAAAAAGAAGCACCAATAGCTGCTTCTTTTAACCGTTGGAATTTATTAGACCATGAGTCAGGTCAAAGTTCATCTTCTACAAATGTGAAAAAAGCAGAAGCTTCTGGGAAAAACACTGAAAGCAGTGCTGTCTTGAGGTTGGAGTCTCATGCAGCTGGTTCAAATGAACAAGGGAAACTTGGTGGGAACTTGGATGCAACTGAAGCTTCTGAAGTAGTAGATGATTGGGAGAAGGCTTATGAATGA 3408 0.4627 PSIEVLTSHEEPKNVENLHFSSNRLRKTLDYINKQTHTKVKGRKTLFLAQNPHIQAHQNDTHHIVVSSSLFSLHRQLRETGGVGPEFRRKVVRVKNGFPEDHLPLLLSNHGAVNQRREVEKGRSSGNQAGKGLKMRDSSLPQLVQEIQEKLMKGTVECMICYEMVRRSALVWSCSSCYSIFHLNCIKKWARAPTSIDLSAEKNQGFNWRCPGCQSVQLTSSKEIRYVCFCGKRVDPPSDLYLTPHSCGEPCGKPLEKEVFSNGGSKEDRCPHVCVLQCHPGPCPPCKAFAPPRLCPCGKKTITTRCFDRQSVLTCGQRCEKLLECGRHRCERICHVGACDPCQVLINASCFCSKKVEVLPCGDMTMKGEFTAEAGVFTCGSNCGRELSCGNHMCNEICHPGSCGECDLLPRRVNTCCCGKTKLDEERKSCLDPIPTCSQVCAKSLPCGTHHCKEVCHVGDCPPCLVLVSQKCRCGSTSRIVECYKTTAENEKFTCEKPCGRKKNCGRHRCSERCCLLSNPNNNLSSEWDPHFCSMPCEKKLRCGQHACESLCHSGHCPPCLETIFTDLTCACGRTSIPPPLPCGTPPPSCQLPCSVPQPCGHIALHSCHFGDCPPCSVPVAKECIGGHVVLRNIPCGSKDIRCNKLCGKTRQCGLHACGRTCHPPPCDNLSCSVQGLPAPCGQTCGAPRRDCRHTCTAPCHPSTPCPDVRCEFPVTITCSCGRITANVPCDAGVSSSNYNADAVHEASITQKLPIPLQPVDPNGKKVPLGQRKLMCDDECAKLERKRVLADAFDITTPNLDSLHFGDNSVDLISDLYRRDPKWVISVEERCKFLVLGKSRSTTHGLKVHVFCPMLKEKRDAVRVIADRWKLAVSAAGWEPKRFIVIHVTSKSKAPTRVLGVKGTPTISAPLPPAFDHMVDMDPRLVVSFPDLPREADISALVLRFGGECELVWLNDKNALAVFHDPARAATAMRRLDHGTFYQGAVSVVPNVGATTTSSTTGAWGAGTTKEGALSVLKGNAWKKAVVQESSWREDSWGDEEWTTGSANVQQSAWKKEAPIAASFNRWNLLDHESGQSSSSTNVKKAEASGKNTESSAVLRLESHAAGSNEQGKLGGNLDATEASEVVDDWEKAYE* 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4308 1135 CDD NF-X1-zinc-finger 315 363 - -
Amo05g4308 1135 ProSiteProfiles Zinc finger PHD-type profile. 155 216 IPR019787 -
Amo05g4308 1135 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 133 1132 - -
Amo05g4308 1135 MobiDBLite consensus disorder prediction 1033 1054 - -
Amo05g4308 1135 CDD NF-X1-zinc-finger 533 576 - -
Amo05g4308 1135 MobiDBLite consensus disorder prediction 116 135 - -
Amo05g4308 1135 MobiDBLite consensus disorder prediction 1072 1099 - -
Amo05g4308 1135 Pfam NF-X1 type zinc finger 653 673 IPR000967 GO:0005634|GO:0008270
Amo05g4308 1135 Pfam NF-X1 type zinc finger 543 560 IPR000967 GO:0005634|GO:0008270
Amo05g4308 1135 Pfam NF-X1 type zinc finger 607 617 IPR000967 GO:0005634|GO:0008270
Amo05g4308 1135 Pfam NF-X1 type zinc finger 685 710 IPR000967 GO:0005634|GO:0008270
Amo05g4308 1135 Pfam NF-X1 type zinc finger 325 343 IPR000967 GO:0005634|GO:0008270
Amo05g4308 1135 Pfam NF-X1 type zinc finger 505 515 IPR000967 GO:0005634|GO:0008270
Amo05g4308 1135 Pfam NF-X1 type zinc finger 389 406 IPR000967 GO:0005634|GO:0008270
Amo05g4308 1135 Pfam NF-X1 type zinc finger 272 287 IPR000967 GO:0005634|GO:0008270
Amo05g4308 1135 Pfam NF-X1 type zinc finger 447 464 IPR000967 GO:0005634|GO:0008270
Amo05g4308 1135 CDD RING-CH-C4HC3_NFX1 157 214 - -
Amo05g4308 1135 CDD NF-X1-zinc-finger 379 422 - -
Amo05g4308 1135 CDD NF-X1-zinc-finger 590 638 - -
Amo05g4308 1135 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 133 1132 IPR034078 GO:0003700
Amo05g4308 1135 CDD NF-X1-zinc-finger 437 485 - -
Amo05g4308 1135 CDD NF-X1-zinc-finger 247 308 - -
Amo05g4308 1135 SUPERFAMILY RING/U-box 148 217 - -
Amo05g4308 1135 ProSiteProfiles Zinc finger RING-type profile. 158 214 IPR001841 -
Amo05g4308 1135 SMART znfxneu3 600 618 IPR000967 GO:0005634|GO:0008270
Amo05g4308 1135 SMART znfxneu3 505 539 IPR000967 GO:0005634|GO:0008270
Amo05g4308 1135 SMART znfxneu3 653 674 IPR000967 GO:0005634|GO:0008270
Amo05g4308 1135 SMART znfxneu3 447 466 IPR000967 GO:0005634|GO:0008270
Amo05g4308 1135 SMART znfxneu3 389 408 IPR000967 GO:0005634|GO:0008270
Amo05g4308 1135 SMART znfxneu3 270 288 IPR000967 GO:0005634|GO:0008270
Amo05g4308 1135 SMART znfxneu3 692 713 IPR000967 GO:0005634|GO:0008270
Amo05g4308 1135 SMART znfxneu3 543 562 IPR000967 GO:0005634|GO:0008270
Amo05g4308 1135 SMART znfxneu3 325 344 IPR000967 GO:0005634|GO:0008270
Amo05g4308 1135 MobiDBLite consensus disorder prediction 1072 1135 - -
Amo05g4308 1135 CDD NF-X1-zinc-finger 681 730 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4308 Amo-Chr5 112994506 112998375 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Amo05g4308 zf-NF-X1 1.4e+02 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4308 K12236 - zju:107419567 1720.29