Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4290 ATGCTATTGATAAACACATATTCATCACTACCCACATATTCCTTCTCCTCCAATGCGCCATCACCTTCAACTCTTGCAGTTGCTACCTTGGGATTCTTCAGCACCACCGCCACACCTTCTAAGTTCCTCCGCAAAACAACAAGCCATAGTCACATCCCAAGTTTCGGTTTTCCCGCTGCCAGGAACACCCCTTTTTCCCGTTATGTTTCGACCATCAGAGCCAAAGCTGGAACCACCGATTACTATTCCGTCTTGAATGTTAGCCGCAATGCTACTCTTCAAGAAATCAAGGCCTCCTATAGGAAGCTAGCTCGCAAGTACCATCCAGACAAACGTCCTGGGGCAGAGGAGAAGTTCAAGGAAATAAGTGCTGCATATGAGGTCCTATCGGATGATGAGAAAAGATCTTTATATGACCGCTTTGGTGAGTCAGGTCTACAAGGAGAAAATGGAGGGTCAGCCAGTGCTTCTGGGGTTGATCCGTTTGATTTATTTGACGCATTCTTTGGCCGCACTGATGGAAATGGAATGTTTGGAGAAAGTGATGAAGGGGGCATGAACTTCAGTTTTAGAAGCAATAGAAGCCGTGGCCTTGATATTCGGTTGCCATCTTCTCAATTTGATTTTGTCTTATGTTTACTTGTATGCTTGACCAATTTCTGTCAGAACACAAAATGTATAGAAATAACTTTATATATTCTGGCATGCAGGCATGATCTTTATTTGAGCTTTGAAGAATCAATTTTTGGAGTACGGAGGGAGATTGAAGTTTCTTGTTTTGAGCCATGTAATGATTGTGATGGTACAGGAGCTAAATCAAGGAATTGCATTAAAATATGTACAAATTGTGATGGCAGAGGAGGAGAAATGAAAAGTCAGAAAACACCCTTTGGAATCATGTCTCAGGTTTCTACCTGCTCTAAGTGCGGTGGTATTGGCAAGATAATCACTGATCATTGTCGAAGGTGTGAAGGTAGTGGTCAGGTGAAATCTAAACGAACAATGGAAGTGGTCATTCCTCCTGGTGCCAGTGATGGAGACACAACACAAATTCGAGGGGAAGGGAATTTTGATTCAAGGAGGCATATAAGCGGGGATCTGTTTGTAGTTCTCCATGTAGATGAAAAGCAGGGTATTTGGAGAGAGGGTCTTCATTTGTACTCAAAGATTAATATTGACTTTACAGATGCAATACTGGGATCTGTTAAAAAGGTAGAAACTGTTGAAGGCTTAAGGGATCTCCAGATTCCATCTGGGGTTCAGCCTGGAGAGGCAGTAAAGTTGTCACGTTTGGGAGTTCCAGACATGAATAGACCATCTTTTCGAGGCGATCATTACTTCATTGTGAATGTTCTGATTCCTAAAAATATCAGTGCTACCGAACGCGTGCTTGTTGAACAGTTAGCCTCACTAAGAGCATCTAAATATGATTCATTGTCTTCTAAGGACACTGGGATATCCCAAGGAAAATTCAAAGAATTCAATATGGATCCAAAATATCAAGATTCAAGCAAGCGAACTAAACATGTTGGTTCACTGTGGACATCAATTCAGAATTTCTTAAGGAGAGGACAGTCTGAAGAGAAGTTTGCATCAATTAGCTTGGATACATCGATGTCATATTGTAGATTCAGCCACCAAAATTATTCAGTCCTAGATTCCTTTGTTGTTTTCTTAATAATTTGTCTTTTAGCATCCATTGCAAACTCTAAGTATTCATTATTTAGGAAAAGAACCCAGTCCCTCATAAGAGAGAAGAGTGAGAACAATTGA 1773 0.4106 MLLINTYSSLPTYSFSSNAPSPSTLAVATLGFFSTTATPSKFLRKTTSHSHIPSFGFPAARNTPFSRYVSTIRAKAGTTDYYSVLNVSRNATLQEIKASYRKLARKYHPDKRPGAEEKFKEISAAYEVLSDDEKRSLYDRFGESGLQGENGGSASASGVDPFDLFDAFFGRTDGNGMFGESDEGGMNFSFRSNRSRGLDIRLPSSQFDFVLCLLVCLTNFCQNTKCIEITLYILACRHDLYLSFEESIFGVRREIEVSCFEPCNDCDGTGAKSRNCIKICTNCDGRGGEMKSQKTPFGIMSQVSTCSKCGGIGKIITDHCRRCEGSGQVKSKRTMEVVIPPGASDGDTTQIRGEGNFDSRRHISGDLFVVLHVDEKQGIWREGLHLYSKINIDFTDAILGSVKKVETVEGLRDLQIPSGVQPGEAVKLSRLGVPDMNRPSFRGDHYFIVNVLIPKNISATERVLVEQLASLRASKYDSLSSKDTGISQGKFKEFNMDPKYQDSSKRTKHVGSLWTSIQNFLRRGQSEEKFASISLDTSMSYCRFSHQNYSVLDSFVVFLIICLLASIANSKYSLFRKRTQSLIREKSENN* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4290 590 Pfam DnaJ central domain 263 327 IPR001305 GO:0031072|GO:0051082
Amo05g4290 590 SUPERFAMILY HSP40/DnaJ peptide-binding domain 237 373 IPR008971 GO:0006457|GO:0051082
Amo05g4290 590 ProSitePatterns Nt-dnaJ domain signature. 119 138 IPR018253 -
Amo05g4290 590 Gene3D DnaJ domain 77 180 IPR036869 -
Amo05g4290 590 SUPERFAMILY Chaperone J-domain 76 179 IPR036869 -
Amo05g4290 590 ProSiteProfiles Zinc finger CR-type profile. 250 332 IPR001305 GO:0031072|GO:0051082
Amo05g4290 590 SUPERFAMILY HSP40/DnaJ peptide-binding domain 381 462 IPR008971 GO:0006457|GO:0051082
Amo05g4290 590 Gene3D - 380 471 - -
Amo05g4290 590 CDD DnaJ 80 131 IPR001623 -
Amo05g4290 590 CDD DnaJ_zf 263 327 IPR001305 GO:0031072|GO:0051082
Amo05g4290 590 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 85 477 - -
Amo05g4290 590 PRINTS DnaJ domain signature 82 100 IPR001623 -
Amo05g4290 590 PRINTS DnaJ domain signature 114 134 IPR001623 -
Amo05g4290 590 PRINTS DnaJ domain signature 134 153 IPR001623 -
Amo05g4290 590 SMART dnaj_3 79 134 IPR001623 -
Amo05g4290 590 CDD DnaJ_C 237 457 - -
Amo05g4290 590 Pfam DnaJ domain 80 139 IPR001623 -
Amo05g4290 590 ProSiteProfiles dnaJ domain profile. 80 142 IPR001623 -
Amo05g4290 590 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 250 330 IPR036410 -
Amo05g4290 590 PANTHER EXPRESSED PROTEIN 85 477 - -
Amo05g4290 590 Hamap Chaperone protein DnaJ [dnaJ]. 77 494 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Amo05g4290 590 Pfam DnaJ C terminal domain 237 454 IPR002939 -
Amo05g4290 590 Gene3D - 263 327 - -
Amo05g4290 590 Gene3D - 237 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4290 Amo-Chr5 112658734 112663845 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4290 81 139 C2H2 Transcription Factor Family AT1G74250 41.791 5.04e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4290 K03686 - gmx:100782135 701.434