Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4289 ATGCATCGCAACAAGCTCATCATTCTCTTCTTCCTCGTCCTCCTTCCTTATGCCAAACCCGACCTCTCTTCCGCCCAACGAGCCGCACTCCTCAACCTACGCTCCGCCGTCGGAGGCCGCACGCTCCTCCTCTGGCTCCCAACCTCTACAACCTCCCCATGCAAGTGGCCTGGCATTCTCTGCGATCCAACCAACACCCATGTCGTCGCCCTCCGCCTCCCCGCCGCCTCACTCTCCGGCCACCTCCCCTCCGCCGTGTTTCCCTCCTTCACCCACCTCCGCACCCTCTCTTTCCGCTTTAACTCACTCTCCGGCCCCATTCCCGCCGACCTCTCCCTCTGCTCCTCCCTCCGCAACCTCTACCTCCACCATAACAACCTCTCCGGCGAGCTTCCACCTTCTCTCTTCAACCTCACCTCTCTCGTTCGCCTCAACCTGGCAGATAACGCCTTTTCAGGCCCGGTTCGAACCGGCTTCAACAATTTGACCCGCTTGAGGACCCTCTACCTCGAGAACAACCGGTTTTCCGGGTCGCTACCCGAGTTGAAAAGACTCGCCGAGTTGGCTCAGTTCAACGTTTCCAACAACTTTCTCAACGGTTCTGTGCCTGAAACGTTGACGGGCTTCTCAAAGGAGTCATTTTTAGGGAACACATTGTGTGGGAAGCCATTGAAGTTGTGTCCTCAGAGTGAGAATGGGAGAAGGGCAAATGGGTCTTTTCCAGGCGTGGCTGCCGGAATTGGGAACAGTGGTTTGAAGGAGGAGAAGAAAGGGAAGCTAAGTGGTGGGGTCATTGCTGGGATTGTGATTGGGTGTGTGGTTGGAATGTTGCTAATTGTGTTTGCTTTGATTCTTCTGTGTAGGAAGAAGAGTGATAACAGAACCAGTAACATTGAAAATATTGCAACATTGAAGCAGGGTAATGGTAGGGGAATCCATGGTGAGAAAAATCATGTTTCTGAAGTAGAGACTGTCGGTGGTGGTGCGAACAAGAAGCTGGTTTTCTTTGGGAATTCAGAAGGGAAGGTGTTTGATTTGGAGGATTTGCTTAGAGCCTCTGCTGAGGTTTTAGGGAAGGGTACTTTTGGAACTTCATATAAGGCTGTGTTGGAGAATGGGCCTGTGGTGGCTGTGAAGAGGCTCAAGGATGTGACACTCTCTGAGAGTGACTTCAGGGATGAGATTGAGGTTGCTGGAGCAATGGTTCATCAGAATTTGGTGCCTCTTAGGGCTTACTATTATAGCAGGGATGAGAAGCTTCTTGTTCATGATTATATGCATATGGGAAGCTTGTCTGCACTCTTGCATGGAAACAAAGGAGCTGGCAGAACACCACTGACTTGGGAACTCAGGTCAGGGATTGCGCTTGGAGCTGCTCGCGCCGTTGAGTACCTACATTCACAAGGGCCTAATGTATCTCATGGAAACATAAAGTCATCAAACATCCTCCTAACCAAGAACTATGAAGCCAGAGTATCCGACTTTGGCCTTGCACAACTTGTTAGCCCCTCGTCGACCCCCAATAGGATTGCCGGCTACCGTGCTCCTGAGGTAACTGATCCTCGCAGAGTGTCTCACAAGGCTGATGTGTACAGCTTTGGCGTGGTGCTCTTGGAGCTTCTTACCGGAAAGGCTCCAACTCACGCCTTGTTGCATGAGGAAGGAGTGGACCTTCCGAGATGGGTGCAATCGGTTGTTAGGGAAGAGTGGACTTCTGAGGTCTTTGATGCTGAGCTCCTTAGCCATCAGACTGTGGAAGAGGATATGGTTGAGTTGTTGCAGCTTGCAGTGGATTGTACAGCTCCATATCCCGATAATCGACCTTCGATCGCCGAAGTGAGACACCGGATAGAAGAGCTACGTGGTTCTAAGGATCTAAAGCAAACCCAGCACCAACATGATTTGATCAGTGTTGTAGATGATCTATCTTGA 1932 0.5124 MHRNKLIILFFLVLLPYAKPDLSSAQRAALLNLRSAVGGRTLLLWLPTSTTSPCKWPGILCDPTNTHVVALRLPAASLSGHLPSAVFPSFTHLRTLSFRFNSLSGPIPADLSLCSSLRNLYLHHNNLSGELPPSLFNLTSLVRLNLADNAFSGPVRTGFNNLTRLRTLYLENNRFSGSLPELKRLAELAQFNVSNNFLNGSVPETLTGFSKESFLGNTLCGKPLKLCPQSENGRRANGSFPGVAAGIGNSGLKEEKKGKLSGGVIAGIVIGCVVGMLLIVFALILLCRKKSDNRTSNIENIATLKQGNGRGIHGEKNHVSEVETVGGGANKKLVFFGNSEGKVFDLEDLLRASAEVLGKGTFGTSYKAVLENGPVVAVKRLKDVTLSESDFRDEIEVAGAMVHQNLVPLRAYYYSRDEKLLVHDYMHMGSLSALLHGNKGAGRTPLTWELRSGIALGAARAVEYLHSQGPNVSHGNIKSSNILLTKNYEARVSDFGLAQLVSPSSTPNRIAGYRAPEVTDPRRVSHKADVYSFGVVLLELLTGKAPTHALLHEEGVDLPRWVQSVVREEWTSEVFDAELLSHQTVEEDMVELLQLAVDCTAPYPDNRPSIAEVRHRIEELRGSKDLKQTQHQHDLISVVDDLS* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4289 643 Gene3D Transferase(Phosphotransferase) domain 1 426 642 - -
Amo05g4289 643 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
Amo05g4289 643 Gene3D Ribonuclease Inhibitor 25 136 IPR032675 -
Amo05g4289 643 SUPERFAMILY Protein kinase-like (PK-like) 355 617 IPR011009 -
Amo05g4289 643 Pfam Protein kinase domain 354 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4289 643 Gene3D Ribonuclease Inhibitor 137 225 IPR032675 -
Amo05g4289 643 Gene3D Phosphorylase Kinase; domain 1 315 425 - -
Amo05g4289 643 SUPERFAMILY L domain-like 39 211 - -
Amo05g4289 643 CDD STKc_IRAK 357 620 - -
Amo05g4289 643 ProSiteProfiles Protein kinase domain profile. 351 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4289 643 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 6 328 - -
Amo05g4289 643 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 323 643 - -
Amo05g4289 643 ProSiteProfiles Leucine-rich repeat profile. 164 186 IPR001611 GO:0005515
Amo05g4289 643 PANTHER OS05G0588300 PROTEIN 6 328 - -
Amo05g4289 643 PANTHER OS05G0588300 PROTEIN 323 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4289 Amo-Chr5 112628109 112631020 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4289 24 623 Receptor kinase-like Gene Family AT3G17840 61.022 0.0 705
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Amo05g4289 Pkinase 9.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4289 - - gmx:100781597 793.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5027 13 149555611 149558362 Amo05g4289 05 112628109 112631020 PCT
Amo05g4289 05 112628109 112631020 Amo13g5027 13 149555611 149558362 PCT