Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4286 ATGGAGAGAGATTTTTTTGGTTTGAGCTCCAAAAGTGATGCAGGGACTACTATCAAAGACGATGCAGTGAGGGGTTCAGGAATGCAGTGGACATTCTCAAACAAAGTCTCATCCATTCCTCAGTACTTGTCCTTCAAGACGACTCTGGAAGATCAGAGAAAGACAATTATGGATCCCCTAGCTTCATCTGGATATATGACCATATCAACTAAGGATGCTTATGACACTGACCAGAAACCATTGTTGAGTGTGGTCCAGAGGAATTTGTCCATCGGAAAGCAAGCCGGAAACAACATTGGAATGACAGTGTATCCACCGCCATGTTCTGGTTCACATTTAGCTAGCCAACAACAGGAATCAAGAATATTTTCACTTTCCAACCAAACAAATAAAGTAAGTCCTGTTCTTCAATCTAACCTTGCTACTACTACCGGACATAGCATGGTTGCTTCAGTCATAAAACCACAAGCACTCGGTTCCAAATCAACCAGCACACCTGTATCTGCTCTTCCATCTGCGAGTTCCATTGTTGGAACTACCGAATTAAGGAATTGTTCCAAGTCTTCTGGGACACCTACTCAGCTGACCATTTTCTATGCCGGTTCAGTATGTGTTTATGATGACATATCTCCTGAGAAGGCCCAGGCTATCATGTTACTTGCTGGAAATGGCTCTGCTCTAAATCAGAACAACACAGTTTCTACAACTAAATTGCAGCCAGCAATGTCTGTTCCCTCCAAAGATAATGGTTTCATTGTAGGCATGCCAATTTCTCTTCCATCGACTTCTCTCCTCGTTTCTCGTCCTGGAGGAGCGTTGGTGGCAGTAGGACCTTCGACTACCTCTACCAACAATTTGGAATCTCCTAATGTTGTTTCAATAAGATCTGCATCTCAAAAAATGGTTAACACAGTAGGGTTGCCTCAGGCACGCAAAGCATCGTTGGCTCGGTTCTTGGAGAAGCGAAAGGAAAGGGTTATGAGCACATCTCCCTACACTTTAAGCAAGAAATCTTCCCCTGAAAGCAGCAATCCTGGATCAGATACTATTAGTCTTTCCATGAACTCCTCCGGTTCCTGTTCGCTACCAGCCATTAACTAA 1101 0.4369 MERDFFGLSSKSDAGTTIKDDAVRGSGMQWTFSNKVSSIPQYLSFKTTLEDQRKTIMDPLASSGYMTISTKDAYDTDQKPLLSVVQRNLSIGKQAGNNIGMTVYPPPCSGSHLASQQQESRIFSLSNQTNKVSPVLQSNLATTTGHSMVASVIKPQALGSKSTSTPVSALPSASSIVGTTELRNCSKSSGTPTQLTIFYAGSVCVYDDISPEKAQAIMLLAGNGSALNQNNTVSTTKLQPAMSVPSKDNGFIVGMPISLPSTSLLVSRPGGALVAVGPSTTSTNNLESPNVVSIRSASQKMVNTVGLPQARKASLARFLEKRKERVMSTSPYTLSKKSSPESSNPGSDTISLSMNSSGSCSLPAIN* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4286 366 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 293 366 - -
Amo05g4286 366 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 28 265 - -
Amo05g4286 366 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 293 366 IPR040390 -
Amo05g4286 366 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 28 265 IPR040390 -
Amo05g4286 366 Pfam tify domain 191 222 IPR010399 -
Amo05g4286 366 Pfam Jas motif 308 332 IPR018467 -
Amo05g4286 366 ProSiteProfiles Tify domain profile. 188 223 IPR010399 -
Amo05g4286 366 SMART tify_2 188 223 IPR010399 -
Amo05g4286 366 MobiDBLite consensus disorder prediction 328 366 - -
Amo05g4286 366 MobiDBLite consensus disorder prediction 327 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4286 Amo-Chr5 112531024 112536134 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4286 28 350 Tify Gene Family AT3G17860 41.003 4.17e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Amo05g4286 tify 3.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4286 K13464 - gmx:100807288 419.853