Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4285 ATGGCATCAAGGCCAAATAAGAAACTAGGCTCAAACAAGAACCTAGAGAGTTTATTAGACATGGATCAAGCAGGAGGAGTTGTGAAAAAATTGAATAATCAACTTAGACCACAGAACTCTGTTCCTGGAACAGGGCTAGAATTTAGTAACCTTTCTTATAGTGTCATAAAGAAGCAGAAGAAGGATGGGGTTTGGATGAAGAAGGAAGCATATCTTCTTCATGACATCTCCGGCCAGGCCAACAAAGGCGAAATCATGGCGATCATGGGGCCGAGTGGTGCTGGAAAATCCACCTTTCTTGATGCCTTGGCAGGGAGAATTGCTCAAGGGAGTCTTGAAGGATCAGTTAGAATTGATGGAAAACCAGTGACTACAAGTTACATGAAGATGGTCTCATCATATGTGATGCAAGATGATCAGTTGTTCCCTATGTTGACAGTTTTTGAGACATTCATGTTTGCAGCTGAGGTTAGGCTTCCTCCATCAGTTTCAAGGGAGGAAAAGAGGAAGAGGGTTTATGAGCTTCTTGATCAACTTGGCTTGCAGAGTGCAACACATACATATATTGGTGATGAGGGAAGAAGAGGAGTATCAGGAGGGGAGAGAAGAAGGGTGTCCATTGGCATAGACATAATTCATAAGCCATCCCTTTTGTTCCTTGATGAACCAACCTCAGGACTTGATTCAACAAGTGCCTACAGTGTTGTTGAAAAGGTTAAGGACATAGCAAGAGGAGGTAGCATTGTCCTCATGACCATACATCAACCTTCATTTAGAATTCAAATGCTCCTTGACAAGATCACAGTCTTAGCGAGGGGAAGGCTTGTATACATGGGAAAGCCAGATTTACTGGGTGTATTCCTTTCTGGATTTGGAAGAACAGTACCAGATGGAGAGAACAGCATGGAGTACCTATTAGATGTCATCAAAGAATATGAGCAATCCACCATTGGACTTGACCCTCTTGTTCTTTACCAACGCGACGGCCTCAAACCAGATCAAGCCGCCAAAACACCAGTCCCAAGAACACCAAGAACAGCTTACACAAGGAAGAACAACCCTGCTGGTGCTTCAAAACACATGATTAGCCTAAAATCTCAAGGATTCACGGCCGGAACATCGGTTCCTGATTCCTCAAACTTCAGCTATGGCTATAATTATGAAGACGAAGGCGAAGATGATGAGGAGAATTTTGACAATTCTCTTGAGAGAAGAAGTGCTACTACTGCTCAAACTCCAAGGACTATGGCCAGTGGTGTCCATCCCCGGCTGGCTTCGCAGTTTTACAAAGACTTCTCTGCCAAGGATTTCTCTGTTTGGCTCTACCACGGTGTGGTAGGGACACCTCGCCGCGCGCCCTCTTGGACGCCGGCTAGGACACCAGGGGTGACACCTATGTCAGCTTCTAGAAGTGTTATGACAAGCCAACATCAAGATCCTTATTATGCTCGCGCAAAAACACCTTCACTAGTTAGCCAATCCATGAACATCTATGCAACTTCATATCAAGAATTTGATATTGAAGAAGAAGTGCTTGATGAGCCAAGCCATGGATCAAAGTATGCAAATCCATGGCTTCGCGAGGTAGTCGTGCTCTCATGGAGGACAATGCTGAATGTTATTCGAACTCCAGAGCTATTCCTGTCCAGAGAGATTGTCCTAACTGTCATGGCACTTGTCCTATCCTCTATCTTCAAGAATCTAAGCCACACAACTTGCTTAGACATCAATAGGCTCCTCAACTTCTACATCTTTGCAGTATGCTTAGTCTTCTTCTCTTCGAATGACGCCGTCCCTTCCTTCATCCTGGAGAGGTTTATCTTCATTAGGGAGACTTCTCACAACGCTTATCGCGCATCATCCTATGTCATTTCTTCCCTTCTTGTTTACCTCCCTTTCTTCGCCGTCCAGGGACTAACTTTCGCAGCCATAACAAAGCTTTTGCTCCATCTTAAAAGCAAACTCTTGTACTTTTGGCTAATCCTTTTTGCTTCTCTTATAACCACCAATGCATATGTGATGCTTGTTAGTGCTCTTGTTCCAAGTTACATCACAGGATACGCGGTTGTTATAGCAACAACCGCGCTGTTCTTCTTAACATGTGGCTTCTTCCTCAAGCGAACTCAGATACCAGTGTATTGGAGGTGGTTGCATTACATTTCTGCTATCAAATACCCTTTTGAAGCATTGTTGACGAACGAATTCGACAACAACAACTGCTACACAGGGAACCTAGCCGATCTGTCTCCGGGTCCAATGGGAGATTTAAAGTTTAGCCAACAACACAATTTCAGCAGTAACTGCATTTTGATTGGGAAGGATGTGTTGGAGACAATGGATATTCAGTTGGATAATGTATGGTATGATATCTTGATCCTGCTAGCTTGGGGTGTTCTTTACAGGTTCTTCTTCTACTTGGTACTGAGATTTTACTCCAAGAATGAGAGAAAATGA 2454 0.4381 MASRPNKKLGSNKNLESLLDMDQAGGVVKKLNNQLRPQNSVPGTGLEFSNLSYSVIKKQKKDGVWMKKEAYLLHDISGQANKGEIMAIMGPSGAGKSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSVSREEKRKRVYELLDQLGLQSATHTYIGDEGRRGVSGGERRRVSIGIDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARGGSIVLMTIHQPSFRIQMLLDKITVLARGRLVYMGKPDLLGVFLSGFGRTVPDGENSMEYLLDVIKEYEQSTIGLDPLVLYQRDGLKPDQAAKTPVPRTPRTAYTRKNNPAGASKHMISLKSQGFTAGTSVPDSSNFSYGYNYEDEGEDDEENFDNSLERRSATTAQTPRTMASGVHPRLASQFYKDFSAKDFSVWLYHGVVGTPRRAPSWTPARTPGVTPMSASRSVMTSQHQDPYYARAKTPSLVSQSMNIYATSYQEFDIEEEVLDEPSHGSKYANPWLREVVVLSWRTMLNVIRTPELFLSREIVLTVMALVLSSIFKNLSHTTCLDINRLLNFYIFAVCLVFFSSNDAVPSFILERFIFIRETSHNAYRASSYVISSLLVYLPFFAVQGLTFAAITKLLLHLKSKLLYFWLILFASLITTNAYVMLVSALVPSYITGYAVVIATTALFFLTCGFFLKRTQIPVYWRWLHYISAIKYPFEALLTNEFDNNNCYTGNLADLSPGPMGDLKFSQQHNFSSNCILIGKDVLETMDIQLDNVWYDILILLAWGVLYRFFFYLVLRFYSKNERK* 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4285 817 Pfam ABC-2 type transporter 529 735 IPR013525 GO:0016020|GO:0140359
Amo05g4285 817 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 282 IPR027417 -
Amo05g4285 817 Gene3D - 45 286 IPR027417 -
Amo05g4285 817 PANTHER ABC TRANSPORTER 7 811 - -
Amo05g4285 817 Pfam ABC transporter 73 225 IPR003439 GO:0005524
Amo05g4285 817 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 46 297 IPR003439 GO:0005524
Amo05g4285 817 ProSitePatterns ABC transporters family signature. 197 211 IPR017871 GO:0005524
Amo05g4285 817 SMART AAA_5 82 282 IPR003593 -
Amo05g4285 817 MobiDBLite consensus disorder prediction 333 357 - -
Amo05g4285 817 MobiDBLite consensus disorder prediction 452 471 - -
Amo05g4285 817 CDD ABCG_EPDR 46 279 - -
Amo05g4285 817 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 7 811 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4285 Amo-Chr5 112527509 112530800 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4285 83 284 Calmodulin-binding Proteins AT2G36910 25.837 7.98e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4285 K05681 - gmx:100819497 1252.27