Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4282 ATGGAGAGAGATTTTTTTGGTTTGAGCTCCAAAAGTGATGCAGGGACTACTATCAAAGACGATGCAGTGAGGGGTTCAGGAATGCAGTGGACATTCTCAAACAAAGTCTCATCCATTCCTCAGTACTTGTCCTTCAAGACGACTCTGGAAGATCAGAGAAAGACAATTATGGATCCCCTAGCTTCATCTGGATATATGACCATATCAACTAAGGATGCTTATGACACTGACCAGAAACCATTGTTGAGTGTGGTCCAGAGGAATTTGTCCATCGGAAAGCAAGCCGGAAACAACATTGGAATGACAGTGTATCCACCGCTATGTTCTGGTTCACATTTAGCTAGCCAACAACAGGAATCAAGAATATTTTCACTTTCCAACCAAACAAATAAAGTAAGTCCTGTTCTTCAATCTAACCTTGCTACTACTACCGGACATAGCATGGTTGCTTCAGTCATAAAACCACAAGCACTCGGTTCCAAATCAACCAGCACACCTGTATCTGCTCTTCCATCTGCGAGTTCCATTGTTGGAACTACCGAATTAAGGAATTGTTCCAAGTCTTCTGGGACACCTACTCAGCTGACCATTTTCTATGCCGGTTCAGTATGTGTTTATGATGACATATCTCCTGAGAAGGCCCAGGCTATCATGTTACTTGCTGGAAATGGCTCTGCTCTAAATCAGAACAACACAGTTTCTACAACTAAATTGCAGCCAGCAATGTCTGTTCCCTCCAAAGATAATGGTTTCATTGTAGGCATGCCAATTYCTCTTCCATYGACTTCTCTCMYCGTTTCTCGTCCTGGAGGAGCGTYGGTGGCAGTSGGAYCTTCGACTACCTCTACCAACAATTTGGAATCTCCTAATGTTGTTTCAATAAGATCTGCATCTCAAAAAATGGTTAACACAGTAGGGTTGCCTCAGGCACGCAAAGCATCGTTGGCTCGGTTCTTGGAGAAGCGAAAGGAAAGGGTTATGAGCACATCTCCCTACACTTTAAGCAAGAAATCTTCCCCTGAAAGCAGCAATCCTGGATCAGATACTATTAGTCTTTCCATGAACTCCTCCGGTTCCTGTTCGCTACCAGCCATTAACTAA 1101 0.4332 MERDFFGLSSKSDAGTTIKDDAVRGSGMQWTFSNKVSSIPQYLSFKTTLEDQRKTIMDPLASSGYMTISTKDAYDTDQKPLLSVVQRNLSIGKQAGNNIGMTVYPPLCSGSHLASQQQESRIFSLSNQTNKVSPVLQSNLATTTGHSMVASVIKPQALGSKSTSTPVSALPSASSIVGTTELRNCSKSSGTPTQLTIFYAGSVCVYDDISPEKAQAIMLLAGNGSALNQNNTVSTTKLQPAMSVPSKDNGFIVGMPIXLPXTSLXVSRPGGAXVAVGXSTTSTNNLESPNVVSIRSASQKMVNTVGLPQARKASLARFLEKRKERVMSTSPYTLSKKSSPESSNPGSDTISLSMNSSGSCSLPAIN* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4282 366 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 291 366 IPR040390 -
Amo05g4282 366 Pfam tify domain 191 222 IPR010399 -
Amo05g4282 366 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 291 366 - -
Amo05g4282 366 Pfam Jas motif 308 332 IPR018467 -
Amo05g4282 366 ProSiteProfiles Tify domain profile. 188 223 IPR010399 -
Amo05g4282 366 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 28 263 IPR040390 -
Amo05g4282 366 SMART tify_2 188 223 IPR010399 -
Amo05g4282 366 MobiDBLite consensus disorder prediction 328 366 - -
Amo05g4282 366 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 28 263 - -
Amo05g4282 366 MobiDBLite consensus disorder prediction 327 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4282 Amo-Chr5 112457371 112462610 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4282 28 339 Tify Gene Family AT3G17860 41.463 2.55e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Amo05g4282 tify 3.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4282 K13464 - gmx:100807288 415.616