Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4273 ATGGCAAAACGTGGTGTGAAACCAGATGTAGTTACGTATAACAGTCTAATGGTTGGATATTGTTTGGTTAATCAGGTGAATAAGGCAAAATATGTATTCAACACAATGGCCCAAAGTAGAGTGTCACTTGATGTTCAAAGTTACAATATCATGATTAATGGCTTGTGCAAAAGTAAAATGGTCGATGAAGCCTTGAATCTCTTTGAAGAAATGCGTCGTAAGTACTTGGTTCCAAACACGGTAACTTACAACACTCTTATTGATGGCTTGAGCAAATCAAAGAGAATCTCTTGTGCATTGGAGCTTCTTGTCAAGATGCATGAAAGAGGTCCACCCGCTAATGTAGTCACTTACAATTCCTTGTTGGATGGGATGTTCAATATCAAACAAGTTCACAAGGCACTTATGTTATTCAAGCAAATGAAAGAGAGTGGCATTGATCCAAATATATTCACGTCTATTGCAAAAGAGATTTTTCAAGATCTTTCCGTGAAAGGCTATCGTCCAAATGTGAGGACATACAATATTATGATCAATGGGCTCTGCAAAGAGGGCTTGTTTAAAGAAGCATTGGCACTCTTGTCAAAAATGGAAGGCAATGGTTGCTTACCAAATTCTGTGACTTTTGAAACTCTTATTCGTGCTTTGTTTGAAAAAGTTGAGAATGACATGGCGGAGAAACTTCTTCGGGAAATGGTTGTACCGTATATAAATCAAGCTAATTCCTATGACTGTTTTATCATAGAAGCAACCATGAACTATTGTTTGTTGGATTGTATATTTGTATCCTCCAGGAATTGTGGATTACTTTTAATGACTCTGAAGTCTGAACTTTATATTTGCTATGAAGAGGAGGCCCGAGGAATAAACCATTTGCACAACTGCACTCCAGTGATTGTACACCGTGATTTGAAGTCACTAAATCTTCTTGTTGATAAAAATTGGGTTGTGAAGTTATGTGATTTTTGGCTTATCAAGAATGAAGCACAGTACATTCCTTTCTTCCAGATTAACTGCAGGAACAGTCTGTGTCCTCTGATAATTGCCAAATGGGGCCTTAGTGCCGAGTGGATGGTGCCTGAAGTGTTAAGAAATGAACCTTCAAATGAAAAGTGCAATGTTTATAGCTTTGGAGTCATATTATGGGAGCTCTCTCCTTTGCAGCAGCCCTGGGGTGGAATGAATCGGATGCAAGTTGCGGGTGCTGTCAGTTTCCAGCATTTTTGCCTTGTCATTCCAGATGATATGGACCCTGCTATCACGGATATTATCAAGCAATGCTGGCAGACGTGA 1293 0.3913 MAKRGVKPDVVTYNSLMVGYCLVNQVNKAKYVFNTMAQSRVSLDVQSYNIMINGLCKSKMVDEALNLFEEMRRKYLVPNTVTYNTLIDGLSKSKRISCALELLVKMHERGPPANVVTYNSLLDGMFNIKQVHKALMLFKQMKESGIDPNIFTSIAKEIFQDLSVKGYRPNVRTYNIMINGLCKEGLFKEALALLSKMEGNGCLPNSVTFETLIRALFEKVENDMAEKLLREMVVPYINQANSYDCFIIEATMNYCLLDCIFVSSRNCGLLLMTLKSELYICYEEEARGINHLHNCTPVIVHRDLKSLNLLVDKNWVVKLCDFWLIKNEAQYIPFFQINCRNSLCPLIIAKWGLSAEWMVPEVLRNEPSNEKCNVYSFGVILWELSPLQQPWGGMNRMQVAGAVSFQHFCLVIPDDMDPAITDIIKQCWQT* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4273 430 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 44 78 IPR002885 -
Amo05g4273 430 Gene3D Transferase(Phosphotransferase) domain 1 273 430 - -
Amo05g4273 430 TIGRFAM PPR: pentatricopeptide repeat domain 116 150 IPR002885 -
Amo05g4273 430 TIGRFAM PPR: pentatricopeptide repeat domain 81 110 IPR002885 -
Amo05g4273 430 TIGRFAM PPR: pentatricopeptide repeat domain 47 79 IPR002885 -
Amo05g4273 430 TIGRFAM PPR: pentatricopeptide repeat domain 173 205 IPR002885 -
Amo05g4273 430 TIGRFAM PPR: pentatricopeptide repeat domain 11 44 IPR002885 -
Amo05g4273 430 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 234 - -
Amo05g4273 430 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
Amo05g4273 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 299 311 IPR008271 GO:0004672|GO:0006468
Amo05g4273 430 Gene3D Tetratricopeptide repeat domain 69 154 IPR011990 GO:0005515
Amo05g4273 430 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Amo05g4273 430 Pfam PPR repeat 4 36 IPR002885 -
Amo05g4273 430 Pfam PPR repeat family 169 216 IPR002885 -
Amo05g4273 430 Pfam PPR repeat family 44 92 IPR002885 -
Amo05g4273 430 Pfam PPR repeat family 114 152 IPR002885 -
Amo05g4273 430 PANTHER OS10G0495100 PROTEIN 1 234 - -
Amo05g4273 430 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
Amo05g4273 430 Pfam Protein tyrosine and serine/threonine kinase 272 429 IPR001245 GO:0004672|GO:0006468
Amo05g4273 430 SMART tyrkin_6 207 430 IPR020635 GO:0004713|GO:0006468
Amo05g4273 430 Gene3D Tetratricopeptide repeat domain 1 68 IPR011990 GO:0005515
Amo05g4273 430 Gene3D Tetratricopeptide repeat domain 155 234 IPR011990 GO:0005515
Amo05g4273 430 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Amo05g4273 430 SUPERFAMILY Protein kinase-like (PK-like) 255 429 IPR011009 -
Amo05g4273 430 ProSiteProfiles Protein kinase domain profile. 115 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4273 Amo-Chr5 112331106 112334892 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4273 284 430 MAP Kinase Kinase Kinase AT1G18160 60.544 9.83e-52 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Amo05g4273 PK_Tyr_Ser-Thr 1.8e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4273 - - ahf:112803886 377.096