Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4246 ATGGATGATTCAACCTCAGATTGTCAGCTGAATCCAAGCGAAGTGAACTATGAATTTGAATCTAACGAAATTCCTGATCCTCTCTTGGTTGTTGATGACCAGTTTGTTCCGAAGGTTAGAATGACCTTTACCACCCTTGAAGATGCTGAAAAATTTTACAGGAACAACGCCAAGGCTGCAGGTTTTTCTACAAGAGTTTGGAGCACAAATAGAAAGGGAAACAAGATTAAGAATCAATTGATTACATGTAGCAGAGAGGGAAAATGGAAATCTAAAATATCTTCGACCGAGAAGACTAATCCGACAGCCAGTTTAAACTGTCCTGCAAGAATTTATATACACCCATTGAAGGATGTCGGTGCTTGGATCATTTCAAAGGTTGTGCTGGATCATTCACACCCCTATTGTCCAAGTAAAGCAGAGATGCTCAAACAGCACAGGGAACTAAGCATGTCCATTCGTCACCGTCATATATGGGTTCCTATCTATCTGGATCACCACTTCTGGGCAGGGATGAGAAGCACACAAAGGAGCGAGAGCATGTATTCATTTTTTAACAAGTTTATCACCCGGAACAGCTCGCTTATTCAGTTCGTCAAACAATACAATAATTGCCTCGTAAGCAGGGAGCAAGCAGAGAGAGAATCAGATGTTGTAGATTTTCATACGGTCATACCGTGTGCAACCAAATCCTCCATTGAAGCTCAGTTTCAAGATGTGTACACTCATCAAAAGTTTAGGGAAGTCCAAGCGCAATTCAGAGGAAAGGCAAATTGCATCACCAGATTAACGAATTCCGCTCTAGGCTATTCAGTATACGAAGTCGGAGAACAAGTTTCCAGCTCAATATTCAACAAGTTTGTGGTTACTTATGACTCAGTTGCAGCCGAGATAAAATGCCAATGCTTATTATTCGAGTCGAGAGGGATACTGTGTCGTCACGCACTAAGCGTGTTAAGCTTTGAACAAGTAAGCCAAGTGTCACCTAGATATATACTGGAACGATGGAGCAAGAAGGTAAAAAGGCGACACACACACATCAAGAGCAGCCACGACGAGCCACTYATGGAGCCAAGAAGCAAGAGGTTRGACCAATTGGTTTTTCGTTCGCAAAATATTTGCGAATTTGCATCCGAATCGGAGGAGCTGACTGCAATTCTYCACCGTGRGTACGATAACGTCATGGCRGAGATGGAATCATTAAAAGCCAAAAGGAAGGGGACATCTTCTTTATCCCACGAAGACGCCAACTTGGAATCCGTTAACGAGCTTCAAAGCCCGCCAAGGATCCGAACAAGAGGACGTCCAAAAAATAGGCTAGGTTCAAAGTTGGACAAACAGATTGCAAATGCCACAAAGAAGAAGAAAACGAAAGTTTTAAATGAGGGTTTTAGTCTCAAAGCATCATGGGGGGATAGATTTCAGGGTGTATATTCAACTTTATTTGGGTTTAAAAAATCGCAGATTATAGGTGTATATTTGATTTGA 1488 0.418 MDDSTSDCQLNPSEVNYEFESNEIPDPLLVVDDQFVPKVRMTFTTLEDAEKFYRNNAKAAGFSTRVWSTNRKGNKIKNQLITCSREGKWKSKISSTEKTNPTASLNCPARIYIHPLKDVGAWIISKVVLDHSHPYCPSKAEMLKQHRELSMSIRHRHIWVPIYLDHHFWAGMRSTQRSESMYSFFNKFITRNSSLIQFVKQYNNCLVSREQAERESDVVDFHTVIPCATKSSIEAQFQDVYTHQKFREVQAQFRGKANCITRLTNSALGYSVYEVGEQVSSSIFNKFVVTYDSVAAEIKCQCLLFESRGILCRHALSVLSFEQVSQVSPRYILERWSKKVKRRHTHIKSSHDEPLMEPRSKRLDQLVFRSQNICEFASESEELTAILHRXYDNVMAEMESLKAKRKGTSSLSHEDANLESVNELQSPPRIRTRGRPKNRLGSKLDKQIANATKKKKTKVLNEGFSLKASWGDRFQGVYSTLFGFKKSQIIGVYLI* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4246 495 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 25 145 IPR031052 GO:0006355
Amo05g4246 495 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 155 394 IPR031052 GO:0006355
Amo05g4246 495 Pfam FAR1 DNA-binding domain 51 135 IPR004330 -
Amo05g4246 495 ProSiteProfiles Zinc finger SWIM-type profile. 287 323 IPR007527 GO:0008270
Amo05g4246 495 PANTHER OS03G0843700 PROTEIN 25 145 - -
Amo05g4246 495 SMART 26again6 298 325 IPR006564 GO:0008270
Amo05g4246 495 PANTHER OS03G0843700 PROTEIN 155 394 - -
Amo05g4246 495 Pfam SWIM zinc finger 288 320 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4246 Amo-Chr5 111597428 111600159 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo05g4246 FAR1 9.8e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4246 - - adu:110280503 572.778