Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4206 ATGGACCCATCCTCGATCCCTCCATCAGCAGGTCCGGCCACCAACACCCTCCCCATGCCAACCATCCCCGCCACCGTGCCCTTCCTCCAGGAGCCGAACAACCACTCTCCTCCGCCGCCGGCCAGCACCGGAACCAACGCTGCTCCCAGCCACCCTCCCTACGCCGAGATGATATACACGGCAATCGAAGCGCTGAAGGAGAAAGAGGGTTCGAGCAAGAGAGCGATAGCGAAGTACATAGAGCAAGTGTACAAGGAGCAGTTACCACCAACTCACTCGACTTTGCTCACTCACCACCTCAACCGACTCAAGAACAACGGCATGCTTCAAATGGTCAAGAAATCATATAAGCTTCCTAGATCTGCTGACGCTACCGACCCTAACCCCTCTCCTTCTGGGTCCTCCAGGCCCAGGGGCCGCCCTCGTAAGGCCCAGATTCAGCCCCAGCCCCAATCACAGCTCCCCCAGCTTGAGGCACAGCCTCAGCCACAGCTGGCTGGGAATGTTAATGTTAATGTCCCTCAGCAGCAGCAGAATGCTGAGCCTGTGTGGGCCGCGCTAGGGCTTGCAGATGAGCCTGCGGTGCAGCCTGGCTCGGAGCTGAAGAAGAGGCCAGGTCGTCCGAAGAAGAATGAGGTTGCACCAGGTGCTGCGGAGACGCCAAATCCAAGCCTGGCTGTTGCTACGCCGGGTCGGAGAGGGCGTCCTCCGGGCTCGAAGAACTCGAAGAGGAAGCCTGGTCGTCCTCCGAAGGCTTCGCCTGCTGGTGGTCCAGCTGCTGCTGCTGTGGCGGATGCTGCGGCTTCTGGCGGGCCTAAGAGGCGTCCGGGCCGACCGGCCAAGAATCAGCAAGTGGCGACTCCTGTTACGTTTGCTGCTGTTTCTGATCCAGACGCCGCTGTGACTGCATTGCCGCCGGCTCCCGTGGTTGTGCCTGCCGGTGGTGTTCCTGTTGGGTCTCCCAGGGCCAGGGGACGCCCGAAGAGGATTCTTGGTGATGCTGTCACGGGGGCTATAATTCCTGTTGCTGTCGGTGCCACTGGCCGCGAAAGGGGCCGCGGACGTGGACGCGGACGCGGTCACGGCTTCGGTACCTTCGGACGTGGACGTGGTCGCGGGCGTGGAAGGCCAGTTGGCCGCCCGAGGAAGGATATAATATTGGCGGGTACTTCACAAAATGAAGATCTCCGGAGGAAGCTTGAACACTTCCAAGCAAAAGTGAAGGAATCTCTGGCCGTGCTTAGGCCTTACTTCAACCATGAAAGTCCAGTAACTGCACTTGCAGCACTCCAAGAATTGGATGTACTGGGAACTATGGACCTCAATGCACCCCTAAGAGATGAAACTATTCCTCAACAACCACAGCAGCAGCTGCCTCTGCAGCAGCAGCCGCCACCGATGCAGCCGTCGCCATCACCACCACCACCGCCTCAACCGCACCAGCAGCTGCCACAACCACAGCTCATGTTCCCACAGCAATTCCACCAGTTTAACCTGCCGCAGTTCCAGCAGCAGCCACCGCAGTATCAGCACCAACACCAGCCCCCACCCCAGCAGCAACTGTTCCATCCATAG 1575 0.5949 MDPSSIPPSAGPATNTLPMPTIPATVPFLQEPNNHSPPPPASTGTNAAPSHPPYAEMIYTAIEALKEKEGSSKRAIAKYIEQVYKEQLPPTHSTLLTHHLNRLKNNGMLQMVKKSYKLPRSADATDPNPSPSGSSRPRGRPRKAQIQPQPQSQLPQLEAQPQPQLAGNVNVNVPQQQQNAEPVWAALGLADEPAVQPGSELKKRPGRPKKNEVAPGAAETPNPSLAVATPGRRGRPPGSKNSKRKPGRPPKASPAGGPAAAAVADAAASGGPKRRPGRPAKNQQVATPVTFAAVSDPDAAVTALPPAPVVVPAGGVPVGSPRARGRPKRILGDAVTGAIIPVAVGATGRERGRGRGRGRGHGFGTFGRGRGRGRGRPVGRPRKDIILAGTSQNEDLRRKLEHFQAKVKESLAVLRPYFNHESPVTALAALQELDVLGTMDLNAPLRDETIPQQPQQQLPLQQQPPPMQPSPSPPPPPQPHQQLPQPQLMFPQQFHQFNLPQFQQQPPQYQHQHQPPPQQQLFHP* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4206 524 Gene3D - 46 128 IPR036388 -
Amo05g4206 524 PANTHER HISTONE H1 33 339 - -
Amo05g4206 524 PANTHER HISTONE H1-LIKE 344 455 - -
Amo05g4206 524 MobiDBLite consensus disorder prediction 1 52 - -
Amo05g4206 524 MobiDBLite consensus disorder prediction 454 524 - -
Amo05g4206 524 MobiDBLite consensus disorder prediction 32 46 - -
Amo05g4206 524 MobiDBLite consensus disorder prediction 187 287 - -
Amo05g4206 524 Coils Coil 393 413 - -
Amo05g4206 524 CDD H15 48 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo05g4206 524 MobiDBLite consensus disorder prediction 347 390 - -
Amo05g4206 524 MobiDBLite consensus disorder prediction 7 31 - -
Amo05g4206 524 MobiDBLite consensus disorder prediction 485 524 - -
Amo05g4206 524 MobiDBLite consensus disorder prediction 145 161 - -
Amo05g4206 524 MobiDBLite consensus disorder prediction 307 330 - -
Amo05g4206 524 MobiDBLite consensus disorder prediction 458 484 - -
Amo05g4206 524 Pfam linker histone H1 and H5 family 51 114 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo05g4206 524 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 50 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo05g4206 524 PRINTS AT-hook-like domain signature 271 282 IPR017956 GO:0003677
Amo05g4206 524 PRINTS AT-hook-like domain signature 319 329 IPR017956 GO:0003677
Amo05g4206 524 PRINTS AT-hook-like domain signature 135 145 IPR017956 GO:0003677
Amo05g4206 524 PANTHER HISTONE H1 344 455 - -
Amo05g4206 524 SMART h15plus2 48 115 IPR005818 GO:0000786|GO:0003677|GO:0006334
Amo05g4206 524 SMART AT_hook_2 321 333 IPR017956 GO:0003677
Amo05g4206 524 SMART AT_hook_2 135 147 IPR017956 GO:0003677
Amo05g4206 524 SMART AT_hook_2 202 214 IPR017956 GO:0003677
Amo05g4206 524 SMART AT_hook_2 243 255 IPR017956 GO:0003677
Amo05g4206 524 SMART AT_hook_2 273 285 IPR017956 GO:0003677
Amo05g4206 524 SMART AT_hook_2 352 364 IPR017956 GO:0003677
Amo05g4206 524 SMART AT_hook_2 371 383 IPR017956 GO:0003677
Amo05g4206 524 SMART AT_hook_2 230 242 IPR017956 GO:0003677
Amo05g4206 524 PRINTS Histone H5 signature 64 81 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Amo05g4206 524 PRINTS Histone H5 signature 37 58 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Amo05g4206 524 PRINTS Histone H5 signature 198 217 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Amo05g4206 524 SUPERFAMILY "Winged helix" DNA-binding domain 48 122 IPR036390 -
Amo05g4206 524 PANTHER HISTONE H1-LIKE 33 339 - -
Amo05g4206 524 MobiDBLite consensus disorder prediction 119 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4206 Amo-Chr5 111075345 111083271 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4206 57 169 Single Myb Histone (SMH) Gene Family AT1G49950 29.412 8.61e-06 45.8