Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4195 ATGCATATCGAGGAGGACATTCGTTCTTTACAGCTTGATTCTGRGGAAGAGACTAATGGATCAGTAACGCCAGAGGATGTGAAGCCAGAAGAAGTTGATAAATCTGAACATATGGATGAAGATCCAAAACCAGAAGTTCAAGCAGAACCTATCGATGTTGAACCAAAAGCAAAAGAGAAGGAAATTCCTCCTACACAGGACGAAGATGATGAGGCGGAGATGATGAAAAAAAGGCACTTAAATGTTGTGTTTATTGGTCATGTAGATGCTGGTAAGTCTACAACAGGAGGTCAGATATTGTTTCTAAGTGGCCAGGTTGATGAAAGAACTATCCAAAAATATGAGAAAGAAGCTAAAGACAAAATTGAAGTTGGAAGAGCACATTTTGAAACAGAGACAACAAGGTTTACAATTTTGGATGCACCTGGTCACAAAAGTTATGTACCTAACATGATCAGTGGTGCATCTCAGGCTGATATTGGAGTGTTGGTAATTTCAGCTCGAAAGGGAGAATTTGAAACAGGATACGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTCGCAAAAACGCTGGGGGTGGCTAAATTGCTTGTTGTTGTCAATAAAATGGATGAGCCGACTGTGGAATGGTATGATGAAATTGAGTCCAAAATGACACCATTTCTAAGACAATCAGGATACAATGTGAAAAAAGGTTGGACATGGTTTGACATGTTAGATACGTTCAGGATGATGTTAAAGTTGGAAGTGGAAGGCCATTTCTTTGGAGTAGATGTCATTTTTCTACCAATATCTGGGTTGGTCGGTACAAATATGAAGACAAGAGTGGATAAAAAAATCTGCCCATGGTGGAATGGCCCATGCTTATTTGAAGCACTTGACGCTGTTGAAGTTCCTGAGCGAGACCCCAAAGGCCCCTTTAGGATGCCTATAATTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGAAAAGTGGAATCTGGTACCGTTCGTGAGGGAGATTCCTTGTTGGTTATGCCAAATAAGGCTCAAGTAAAAGTTGTTGCTATATTTATTGATGAGGATAAGGTAAAACGTGCTGGACCTGGTGAAAATTTAAGGATTAGATTATCTGGTGTTGAAGAAGACGACATATCAAGTGGGTTTGTCCTATCAAGTGTTGCAAATTCAATACCAGCTGTTACTGAGTTTGTTGCTCAATTGGCAATCCTTGAATTGCTGGACAATGCTATTTTTACTGCGGGGTATAAGGCTGTTTTGCATATCCACTCTGTTGTTGAAGAATGTGAGATTATTGAGCTCTTACATCAAATTGATCCAAAAACAAGGAAGCCTATGAAAAAAAAGGTCCTCTTCGTGAAGAACGGGGCTAATGTTGTGTGCCGAATTCAGGTTAATAGCATGATATGCATTGAGAAGTTCTCTGATTTTCCACAGCTTGGGAGATTTACTCTTCGCAGTGAAGGGAAAACTGTTGCAGTGGGGAAGGTTACTGCTCTGTAA 1509 0.4036 MHIEEDIRSLQLDSXEETNGSVTPEDVKPEEVDKSEHMDEDPKPEVQAEPIDVEPKAKEKEIPPTQDEDDEAEMMKKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKIEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVAKLLVVVNKMDEPTVEWYDEIESKMTPFLRQSGYNVKKGWTWFDMLDTFRMMLKLEVEGHFFGVDVIFLPISGLVGTNMKTRVDKKICPWWNGPCLFEALDAVEVPERDPKGPFRMPIIDKFKDMGTVVMGKVESGTVREGDSLLVMPNKAQVKVVAIFIDEDKVKRAGPGENLRIRLSGVEEDDISSGFVLSSVANSIPAVTEFVAQLAILELLDNAIFTAGYKAVLHIHSVVEECEIIELLHQIDPKTRKPMKKKVLFVKNGANVVCRIQVNSMICIEKFSDFPQLGRFTLRSEGKTVAVGKVTAL* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4195 502 CDD eRF3_C_III 394 502 - -
Amo05g4195 502 Pfam Elongation factor Tu domain 2 320 386 IPR004161 GO:0005525
Amo05g4195 502 PANTHER TRANSLATION FACTOR 258 496 - -
Amo05g4195 502 PANTHER TRANSLATION FACTOR 122 232 - -
Amo05g4195 502 Gene3D - 60 301 IPR027417 -
Amo05g4195 502 SUPERFAMILY Translation proteins 299 391 IPR009000 -
Amo05g4195 502 MobiDBLite consensus disorder prediction 23 75 - -
Amo05g4195 502 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 77 305 IPR000795 GO:0003924|GO:0005525
Amo05g4195 502 PANTHER TRANSLATION FACTOR 2 121 - -
Amo05g4195 502 MobiDBLite consensus disorder prediction 1 75 - -
Amo05g4195 502 PRINTS GTP-binding elongation factor signature 153 164 IPR000795 GO:0003924|GO:0005525
Amo05g4195 502 PRINTS GTP-binding elongation factor signature 197 206 IPR000795 GO:0003924|GO:0005525
Amo05g4195 502 PRINTS GTP-binding elongation factor signature 81 94 IPR000795 GO:0003924|GO:0005525
Amo05g4195 502 PRINTS GTP-binding elongation factor signature 137 147 IPR000795 GO:0003924|GO:0005525
Amo05g4195 502 CDD eRF3_II 307 388 - -
Amo05g4195 502 CDD EF1_alpha 81 301 - -
Amo05g4195 502 Pfam Elongation factor Tu C-terminal domain 393 501 IPR004160 -
Amo05g4195 502 Pfam Elongation factor Tu GTP binding domain 77 280 IPR000795 GO:0003924|GO:0005525
Amo05g4195 502 PANTHER BNAA06G12300D PROTEIN 258 496 - -
Amo05g4195 502 PANTHER BNAA06G12300D PROTEIN 122 232 - -
Amo05g4195 502 PANTHER BNAA06G12300D PROTEIN 2 121 - -
Amo05g4195 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 311 IPR027417 -
Amo05g4195 502 Gene3D Translation factors 395 502 - -
Amo05g4195 502 Gene3D Translation factors 305 390 - -
Amo05g4195 502 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 397 501 IPR009001 -
Amo05g4195 502 TIGRFAM small_GTP: small GTP-binding protein domain 80 213 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4195 Amo-Chr5 110839147 110845080 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4195 77 502 Eukaryotic Initiation Factors Gene Family AT5G60390 33.698 4.37e-77 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4195 K03267 - gmx:100793653 804.283