Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4175 ATGGCAGAGCTTGATCCATCCAAGAAAGTAGCTGATAGGTATCTCAAGCGTGAGGTTCTTGGTGAAGGTACCTATGGAGTCGTTTACAAAGCCATTGATACACAGACGGGYCAGACGGTTGCGATTAAGAAGATTCGGCTTGGTAAGCAGAAAGAAGGGGTGAATTTTACAGCACTTCGAGAAATAAAATTGCTCAAAGAGCTCAAAGATCCAAATATTATTGAGTTGATTGATGCATTCCCACACAAAGGGAACTTGCATCTTGTGTTTGAGTTCATGGAGACTGACCTTGAAGCTGTGATACGGGACAGAAATATTTTTCTTTCGCCGGGGGATATAAAATCTTACCTTCAGATGACACTAAAAGGTCTTGCAGTTTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAACCAAATAACTTGTTGATAGGGTCTAATGGACAGCTAAAACTTGCAGATTTTGGRTTAGCACGGATATTTGGAAGCCCAGATCGCAGGTTCACACATCAGGTATTTGCTCGGTGGTACAGAGCACCTGAGTTATTATTTGGTACCAAGCAGTACGGGGCAGGGGTAGATGTTTGGGCTGCAGCTTGTATTTTTGCTGAACTACTTCTTCGTCGTCCCTTCCTCCAGGGTTCAAGTGATATTGATCAATTAGGGAAGATTTTTGCAGCATTTGGAACCCCATCACCTGCTCAGTGGCCTGATATGGTATATCTTCCTGACTATGTTGAATACCAACATGTTCCTGCTCCACCTTTGCGTTCTTTATTTCCAATGGCAAGTGATGATGCTTTAGATTTGTTGTCAAAGATGTTTACATATGATCCGAATGCTAGAATTTCAGCTCAGCAGGCATTAGAACATAGGTATTTCTCTTCCGCACCTCTGCCTACAGTTCCAGAGAAGCTTCCAAGACCTGCCCCTAAGAAGGAATCTAAAGCTTCAGATGTCGATTCACAGGATGGTCCTACTGTGTTATCACCTCCAAGAAAGTCGAGGAGAATTATGCCGGGGCGTGATGGATTTGAAGGAAATTCTTTGCAGGAAGATAAGTTTGATGACAATGCCGGTAATTTCCGGCAAACAGTAGCTGATAATACAGGAAAGAATGGGCCAGCACCGATGTCACTAGATTTTTCTCTCTTCGGATTAAAACCTCCTAATAGACCTACAATTACAAGCGCTGACAGATCGCATTTAAAAAGAAAATTAGATTTGGAATTCGGCAACCAGAATGACTAA 1251 0.4245 MAELDPSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPGDIKSYLQMTLKGLAVCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGAGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPSPAQWPDMVYLPDYVEYQHVPAPPLRSLFPMASDDALDLLSKMFTYDPNARISAQQALEHRYFSSAPLPTVPEKLPRPAPKKESKASDVDSQDGPTVLSPPRKSRRIMPGRDGFEGNSLQEDKFDDNAGNFRQTVADNTGKNGPAPMSLDFSLFGLKPPNRPTITSADRSHLKRKLDLEFGNQND* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4175 416 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Amo05g4175 416 SUPERFAMILY Protein kinase-like (PK-like) 10 301 IPR011009 -
Amo05g4175 416 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4175 416 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4175 416 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Amo05g4175 416 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Amo05g4175 416 MobiDBLite consensus disorder prediction 336 359 - -
Amo05g4175 416 Gene3D Phosphorylase Kinase; domain 1 5 94 - -
Amo05g4175 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Amo05g4175 416 MobiDBLite consensus disorder prediction 299 377 - -
Amo05g4175 416 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 357 - -
Amo05g4175 416 PANTHER CELL DIVISION PROTEIN KINASE 9 357 - -
Amo05g4175 416 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4175 Amo-Chr5 110681972 110686276 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4175 4 411 Core Cell Cycle Gene Families AT1G73690 74.510 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Amo05g4175 Pkinase 5.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4175 K02202 - gmx:100814263 768.074