Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4172 ATGGATATCGAGGAGGACATTCGTTCTTTACAACTTGATTCTGCGGAAGAGACTAATGGATCAGTAACGCCAGAGGATGTGAAGCCAGAAGAAGTTGATAAATCTGAACATATGGATGAAGATCCAAAACCAGAAGTTCAAGCAGAACCTATCGATGTTGAACCAAAAGCAAAAGAGAAGGAAATTCCTCCTACACAGGATGAAGATGATGAGGCGGAGATGATGAAAAAAAGGCACTTAAATGTTGTGTTTATTGGTCATGTAGATGCTGGTAAGTCTACAACAGGAGGTCAGATATTGTTTCTAAGTGGCCAGGTTGATGAAAGAACTATCCAAAAATATGAGAAAGAAGCTAAAGACAAAAGTAGAGAAAGCTGGTATATGGCTTATATTATGGACACAAATGAGGAGGAGAGGGTAAAGGGAAAGACAGTTGAAGTTGGAAGAGCACATTTTGAAACAGAGACAACAAGGTTTACAATTTTGGATGCACCTGGTCACAAAAGTTATGTACCTAACATGATCAGTGGTGCATCTCAGGCCGATATTGGAGTGTTGGTAATTTCAGCTCGAAAGGGAGAATTTGAAACAGGATACGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTCGCAAAAACGTTGGGGGTGGCTAAATTGCTTGTTGTTGTCAATAAAATGGATGAGCCGACTGTGGAATGGTCAAAAGAAAGGTATGATGAAATTGAGTCCAAAATGACACCATTTCTAAAACAATCAGGATACAATGTGAAAAAAGATGTCATTTTTCTACCAATATCTGGGTTGGTCGGTACAAATATGAAGACAAGAGTGGATAAAAAGATCTGCCCATGGTGGAATGGCCCATGCTTATTTGAAGCACTTGATGCTGTTGAAGTTCCTGAGCGAGACCCCAAAGGCCCTTTTAGGATGCCTATAATTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGAAAAGTGGAATCTGGTACCGTTCGTGAGGGAGATTCCTTGTTGGTTATGCCAAATAAGGCTCAAGTAAAAGTTGTTGCTATATATATTGATGAGGATAAGGTCAAACGTGCTGGACCTGGTGAAAATTTAAGGATTAGATTATCTGGTGTTGAAGAAGACGACATATCAAGTGGGTTTGTCCTATCAAGTGTTGCAAATTCAATACCAGCTGTTACTGAGTTTGTTGCTCAATTGGCAATCCTTGAATTGCTGGACAATGCTATTTTTACTGCGGGGTATAAGGCTGTTTTGCATATCCACTCTGTTGTTGAAGAATGTGAGATTATTGAGCTCTTACATCAAATTGATCCAAAAACAAGGAAGCCTATGAAAAAGAAGGTCCTCTTTGTGAAGAACGGGGCTAATGTTGTGTGCCGAATTCAGGTTAATAGCATGATATGCATTGAGAAGTTCTCTGATTTTCCACAGCTTGGGAGATTTACTCTTCGCAGTGAAGGGAAAACTGTTGCAGTGGGGAAGGTTACTGCCCTGTAA 1512 0.4028 MDIEEDIRSLQLDSAEETNGSVTPEDVKPEEVDKSEHMDEDPKPEVQAEPIDVEPKAKEKEIPPTQDEDDEAEMMKKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVAKLLVVVNKMDEPTVEWSKERYDEIESKMTPFLKQSGYNVKKDVIFLPISGLVGTNMKTRVDKKICPWWNGPCLFEALDAVEVPERDPKGPFRMPIIDKFKDMGTVVMGKVESGTVREGDSLLVMPNKAQVKVVAIYIDEDKVKRAGPGENLRIRLSGVEEDDISSGFVLSSVANSIPAVTEFVAQLAILELLDNAIFTAGYKAVLHIHSVVEECEIIELLHQIDPKTRKPMKKKVLFVKNGANVVCRIQVNSMICIEKFSDFPQLGRFTLRSEGKTVAVGKVTAL* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4172 503 MobiDBLite consensus disorder prediction 1 72 - -
Amo05g4172 503 SUPERFAMILY Translation proteins 300 392 IPR009000 -
Amo05g4172 503 Gene3D - 59 302 IPR027417 -
Amo05g4172 503 Gene3D Translation factors 396 503 - -
Amo05g4172 503 Pfam Elongation factor Tu C-terminal domain 394 502 IPR004160 -
Amo05g4172 503 Gene3D Translation factors 306 391 - -
Amo05g4172 503 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 133 148 IPR031157 -
Amo05g4172 503 PANTHER TRANSLATION FACTOR 2 497 - -
Amo05g4172 503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 312 IPR027417 -
Amo05g4172 503 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 77 306 IPR000795 GO:0003924|GO:0005525
Amo05g4172 503 CDD EF1_alpha 81 302 - -
Amo05g4172 503 CDD eRF3_II 308 389 - -
Amo05g4172 503 Pfam Elongation factor Tu GTP binding domain 77 283 IPR000795 GO:0003924|GO:0005525
Amo05g4172 503 CDD eRF3_C_III 395 503 - -
Amo05g4172 503 PRINTS GTP-binding elongation factor signature 81 94 IPR000795 GO:0003924|GO:0005525
Amo05g4172 503 PRINTS GTP-binding elongation factor signature 160 170 IPR000795 GO:0003924|GO:0005525
Amo05g4172 503 PRINTS GTP-binding elongation factor signature 176 187 IPR000795 GO:0003924|GO:0005525
Amo05g4172 503 PRINTS GTP-binding elongation factor signature 220 229 IPR000795 GO:0003924|GO:0005525
Amo05g4172 503 Pfam Elongation factor Tu domain 2 321 387 IPR004161 GO:0005525
Amo05g4172 503 MobiDBLite consensus disorder prediction 23 72 - -
Amo05g4172 503 PANTHER BNAA06G12300D PROTEIN 2 497 - -
Amo05g4172 503 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 398 502 IPR009001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4172 Amo-Chr5 110640921 110648635 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4172 77 503 Eukaryotic Initiation Factors Gene Family AT5G60390 37.355 1.33e-95 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4172 K03267 - gmx:100793653 896.73