Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4119 ATGAGGTGTGTCCCGTTTAGCTGGTTTCAATGCTACACTACAAGGAAGAACCAACCTCAACAGATTTCAAACCACCCTCAACAATTTTCTTCAGATTTTGGGTTCCAATTTCATACATTCTCCTATGAAGAACTTTTAATAGCCACCAAGCATTTTGCTTCCTCTGGGATACTCGGAAAGGGAAGCTTTGGCATAGTATATCATGGTAAACTTCAAGATGGGAGACAGATTGCAGTCAAATCCTTGCGCGAAAACAATGACAAGAAAGTTCAACAGTTTGTCAATGAAATAGAAGTCTTAAGCAAATTGAGCCATCAAAACCTTCGTAAGAAACAAGGCACTCTAGTACCCTGGCATACCAGATTGAACATAGCAATTGAGGCTGCAAGTGCATTGGCTTATCTTCATAATTCAGGAATTATTCACCGCGACATAAAATCCTCCAACATTCTTTTGGATGATAACTTGTGTGTTAAGGTAGCCGATTTTGGCCTTTCGCGCACGCTTCCTTTGGTTGTTTCAACTTCAAAAGAGGCTGCTACTTTTGCTTCTCATGCCTCAACTGCTCCACAAGGAACAAATGGATATATAGACCCTGACTATTTTCAATTTCACAGGGTTTGTGACAAGAGTGATACTTATAGCTTTGGCGTGGTTTTAGCCGAGATTATATCTTCGTTGCCAGCGGTTGATGATACATGGAATCCATATGAGGTACCATTACTGTCTCACCTTGCCATGAACAAAATCCAAAATGAAGCATTGCACGAGTTGGTGGATCCATGCCTTGGTTTTCAACCAGACAATGAGATTGGAGAATCTATAACTGCTGTGGCTGAGTTGGCATTTCAGTGCCTGCAATGTCCTAAGGAACTAAGGCCCTCTATGAAGCAGTGCTGCTTCACTAGCACTTCTTCAAATGGTGTTATTCAGATAAAGGGGAAAATCTTCCCCTACTTGATACTTGCACAAGCAACAAATAATTTTAATAAACGTAATTGTCTTGGAAAGATAGGCTTGAAGAATCTATATTATGGCAAACTTAGAGATGGGTGTGAGATTGTAATTGAAAGAGTATCATCCAATGACAAGAGGCAAATATTTCAGCAGTTCCTCAATGAAATTTTGGTTTCGAATATCCTGCATCACAAAAATCTCGTGACATTTCGCGGTTATGCCTTTCATCATGAGGAATTCCTGGTAGCACATGAATATCTCTCCAATGGCACTCTTGCTGCTTATCTTGAATGTGAAATCCAACATAATAAATGCACATTACCTTTGCTTACTCGAATGGAAATTGCCATCGATATTGCGAATGCATTGAGCTATCTTCACAAGCATGGCATCATCCACCATAACATAAACTCCAGCAATATTCTGCTAGATAAGAACATGTGTGCTAAAGTTGCTGGCTTGCACTTATCAAGGAAACTTCCAGAGGATGTTTCTGTCAATGCCACCAGCATTGTTTCAATTTCAAGTGATATAGCAAAAAATTGTGTTTACATTGACCCAGAGTATGTGTCTCATGGCAGAGTCAGCACCAAGAATGATGTTTATAGCTTCGGAGTAGTGTTGTGCGATTTGATATCATCCAAGCTTGCTAAGTATTGGGAAGGTTGTGACCGAGAAAGTATTGCTGTCCTTTTAGGCAGAAATATTGAAAATCAAGCTTTGGACAAGGTATTGGATCCAAGAACTGGCTTCCAATCAGACCATAAGATCATGCAGGTGATGACTGCAATGGTGGAGCTTGCACTTAATTGCATGGGATTTCCACAAGAACAAAGGCCAAATATGGAACAGGTGCTAGATATCCTCAATGGCAAGAGACTAGAGAGATATAAAACAATAGAAGCTTTCAGAATCTTTGACTATGCTGATCTCAGAAAAGCTACCATGCAATTTCGTCCAGATAGGATCCTTGGAGAGGGAGGGTTCGGCAGCGTATTTTATGGAAAACTTCAAGATGGACTTGAAGTTGCAATAAAACGTTTCCACAACATGCGGGAAAATTCTCTTAAGCAATTCATGAATGAAATCGAGATCTTAAGACTCTTGCACCATAGAAACCTGGTTTCACTCTACGGCCGCAGCTCTGGTGAACATAACGAACTCTTTCTAGTCTATGAGTACGTCCCCAATGGCACTGTCTCTAGACATATTCATGGAGGTAAAATTGAAAAGCTACCATGGCTTACTAGATTGAATATTGCCATAGAAACTGCAACTGCATTGGCATATCTTCATGATTCAGGTATCATACACCGTGATGTAAAAGGAAGTAATATCCTCTTGGATGAAAATTTTTCTGTTAAAGTTGCAGATTTCGGACTCTCACGGTCCCAACCAGATTATGTTACTCATGTGTCAACAGCTCCAGCAGGGACAAATGCCTATATGGATCCGGAATATTTCCAAACAGGCAGGGTTTCCTATAGAAGTGATGTATATAGCTTTGGAGTGGTCTTGTTTGAGCTCATATCATCTAAACCTGCATTTTGGAGGGACGTCCCACACGGCGAGGCGGTTGGCCTCGCTAAGTTTGCAATAATCAAACTGTTAAATAACACATTGAAGGAGCTAGTAGATCCAGATATTGGGTATGATTCAGATAAAGATGTAACGGAAATGGTAACAGCAGTGGCAGAGTTGGCCTTTCAGTGCATTCAGTGTCCTAAAGAGCTTAGACCTTCCATGAAACAGGTGCTGGAGACCCTTGAGGGTATAAAGAAGGGAACATGGGGATTCAACCAGATAACTTAG 2769 0.4074 MRCVPFSWFQCYTTRKNQPQQISNHPQQFSSDFGFQFHTFSYEELLIATKHFASSGILGKGSFGIVYHGKLQDGRQIAVKSLRENNDKKVQQFVNEIEVLSKLSHQNLRKKQGTLVPWHTRLNIAIEAASALAYLHNSGIIHRDIKSSNILLDDNLCVKVADFGLSRTLPLVVSTSKEAATFASHASTAPQGTNGYIDPDYFQFHRVCDKSDTYSFGVVLAEIISSLPAVDDTWNPYEVPLLSHLAMNKIQNEALHELVDPCLGFQPDNEIGESITAVAELAFQCLQCPKELRPSMKQCCFTSTSSNGVIQIKGKIFPYLILAQATNNFNKRNCLGKIGLKNLYYGKLRDGCEIVIERVSSNDKRQIFQQFLNEILVSNILHHKNLVTFRGYAFHHEEFLVAHEYLSNGTLAAYLECEIQHNKCTLPLLTRMEIAIDIANALSYLHKHGIIHHNINSSNILLDKNMCAKVAGLHLSRKLPEDVSVNATSIVSISSDIAKNCVYIDPEYVSHGRVSTKNDVYSFGVVLCDLISSKLAKYWEGCDRESIAVLLGRNIENQALDKVLDPRTGFQSDHKIMQVMTAMVELALNCMGFPQEQRPNMEQVLDILNGKRLERYKTIEAFRIFDYADLRKATMQFRPDRILGEGGFGSVFYGKLQDGLEVAIKRFHNMRENSLKQFMNEIEILRLLHHRNLVSLYGRSSGEHNELFLVYEYVPNGTVSRHIHGGKIEKLPWLTRLNIAIETATALAYLHDSGIIHRDVKGSNILLDENFSVKVADFGLSRSQPDYVTHVSTAPAGTNAYMDPEYFQTGRVSYRSDVYSFGVVLFELISSKPAFWRDVPHGEAVGLAKFAIIKLLNNTLKELVDPDIGYDSDKDVTEMVTAVAELAFQCIQCPKELRPSMKQVLETLEGIKKGTWGFNQIT* 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4119 922 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 17 108 IPR044652 -
Amo05g4119 922 Gene3D Transferase(Phosphotransferase) domain 1 106 307 - -
Amo05g4119 922 ProSitePatterns Protein kinases ATP-binding region signature. 643 665 IPR017441 GO:0005524
Amo05g4119 922 Pfam Protein kinase domain 118 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4119 922 Pfam Protein kinase domain 640 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4119 922 CDD STKc_IRAK 643 911 - -
Amo05g4119 922 ProSiteProfiles Protein kinase domain profile. 329 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4119 922 Pfam Protein tyrosine and serine/threonine kinase 349 607 IPR001245 GO:0004672|GO:0006468
Amo05g4119 922 Pfam Protein tyrosine and serine/threonine kinase 57 114 IPR001245 GO:0004672|GO:0006468
Amo05g4119 922 ProSiteProfiles Protein kinase domain profile. 52 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4119 922 Gene3D Phosphorylase Kinase; domain 1 308 405 - -
Amo05g4119 922 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 112 298 IPR044652 -
Amo05g4119 922 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 308 616 IPR044652 -
Amo05g4119 922 ProSitePatterns Protein kinases ATP-binding region signature. 58 80 IPR017441 GO:0005524
Amo05g4119 922 Gene3D Phosphorylase Kinase; domain 1 622 713 - -
Amo05g4119 922 ProSiteProfiles Protein kinase domain profile. 637 911 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4119 922 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Amo05g4119 922 ProSitePatterns Serine/Threonine protein kinases active-site signature. 755 767 IPR008271 GO:0004672|GO:0006468
Amo05g4119 922 SUPERFAMILY Protein kinase-like (PK-like) 306 611 IPR011009 -
Amo05g4119 922 SUPERFAMILY Protein kinase-like (PK-like) 619 912 IPR011009 -
Amo05g4119 922 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 617 914 - -
Amo05g4119 922 SUPERFAMILY Protein kinase-like (PK-like) 28 300 IPR011009 -
Amo05g4119 922 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 308 616 - -
Amo05g4119 922 Gene3D Transferase(Phosphotransferase) domain 1 46 105 - -
Amo05g4119 922 SMART serkin_6 637 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4119 922 SMART serkin_6 329 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4119 922 SMART serkin_6 52 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4119 922 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 112 298 - -
Amo05g4119 922 Gene3D Transferase(Phosphotransferase) domain 1 714 916 - -
Amo05g4119 922 Gene3D Transferase(Phosphotransferase) domain 1 406 621 - -
Amo05g4119 922 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 17 108 - -
Amo05g4119 922 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 617 914 IPR044652 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4119 Amo-Chr5 109522482 109528805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4119 624 912 Receptor kinase-like Gene Family AT1G25390 56.655 9.50e-100 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Amo05g4119 Pkinase 2.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4119 - - gmx:102666805 740.725