Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4115 ATGGATTGCCACGTACATAGTGAACTCTCTATGGTGGTTACATACATAGGGATCACCATCTCTTTGTTCCTGATGGCCGCTTTGCCACCATCCCTTTCTCAATCACCAACTTCCAATTATCACTCCCTGTGTAGCCAGCCATATAAGTGTGGCGCACTAGAAGTATACTACCCTTTCTGGGGGGGAAACCGACCACCCCAGTGTGGCGGCAACCAACAACTCCGGCTTTCATGCGAGAAGGAGAATGATGGATACGGCGGTTACGCTTACATTGAAACGGACTCACAACGATTCAAAGTGGTGGGAAATGATGATGCCGTAAATACTACTTTTACATTGGTGCCCTTGCCAGTCGCTGACGGAGAACATGATATTTGCTCTATGAATTTCAATTATTCTCTGAATTACCTTCCATTCACCTATAACCAAACAGTGCACAACATCACCATATTCTATGACTATGATTGCACCTACTCTCGGGATTATCAAAGCCTAGGGTGCGTTGGTAGCGGTGGTGGTGGTCATGTTGTGTATTATAATGGTACGGAAAAAGAGGTGCTGGCAAGTCATGAAGAGCTTAAGGATTGCCAACATCGTATCCAAGTGGCCGCTGAGGCTGTTGAGTTGAACGGAGTCCGAGTTGATGATGCTTTTCCTCTGTATTTCGGTAAAGGTGTGTCGGTCAACTACACTTATTCTCAAGATTGTATGAGATGCGTGGAGAGTAAAGGAAGTTGCGGGAGCAACGATACGCATGCATTTACCTGCTATTGCCCTGATGGATCTAACGCCCTCCAATGTCCTCATCGTAACAGAAATCACTGGAGATGGATAGTCCTTATAGTTGCTGCTGCTGTGATTGGATTGGTAGCCCTTGCCATGGCCGTTATTTTCTATCAAAGGCGAAAGAAGACCAGTTATGGATTGTCTTATACACAGCCACGGAGCTTGTCTTCTGATCCATCATCTTGGAAAGATACTGAGAAGGGAAGTCAATACTTTGGAGCGCACCTCTTTACCTATACTGAACTTGAAGAGGCTACTAACTTCTTTGACCCATCCAGAGAACTAGGAGATGGAGGTTTCGGGACAGTGTATTATGGACAACTACCAGATGGACGTTGCATCGCAGTGAAGCGGTTGTATGAGAACAATTACAGGAGAGTAGAACAATTCATGAATGAAATTGAGATCCTAACTCGCCTACGCCACAAAAACCTTGTCTCACTATTTGGTTGCACTTCTCGCCACAGCCGTGAACTTCTTCTTGTGTATGAGTACATTGCAAATGGAACTGTTGCTGATCATCTTCATGGAAACCGAGCCAAAGCTGGTACACTGCCCTGGCATATTAGGATGAACATTGCCTTGGAGACTGCAACTGCATTGGCATATCTTCATGATTCCGAGATCATCCATAGAGATGTCAAAACCAATAATATTCTTCTTGACAGCAACTTTGTTGTGAAAGTCGCAGATTTTGGACTTTCGCGCCTTTTTCCAAACAATGTCACCCATGTTTCAACCGTTCCACAAGGGACCCCTGGTTATGTGGATCCAGAGTACCATGAATGCTACCAGCTTACTGTCAAAAGTGATGTTTATAGCTTTGGAGTTGTGTTGGTTGAGCTGATATCATCCTTGCCGGCTGTTGATATCACAAGGCATCGGCACGAAATCAATTTGTCCACCATGGCCATTAACAAGATTCAGAATCAGGCACTGCATGAGCTAGTGGACAAAAATCTTGGGTTTGATTCAGATTTGAAGGTAAGGAAGATGATAAATGCAGTAGCCGAGTTAGCATTTCAGTGCTTGCAGAGTTCCAAAGATATGAGACCTTCAATGCAAGAAGTAGTGGATACTCTCAAGGATATACAGAGTGATGGCGAGTACAAAGGCCAAAGCCATGCTGAAGTCATGGATATCTCATCAACAGCAGATGATGCTGTATTGCTGAAGGATGATCCGCCTCCACCATCGCCGGCTTCAACTGTAGGGAGCAAATCTACAACACCAAATGCTAGTGGATAA 2034 0.4479 MDCHVHSELSMVVTYIGITISLFLMAALPPSLSQSPTSNYHSLCSQPYKCGALEVYYPFWGGNRPPQCGGNQQLRLSCEKENDGYGGYAYIETDSQRFKVVGNDDAVNTTFTLVPLPVADGEHDICSMNFNYSLNYLPFTYNQTVHNITIFYDYDCTYSRDYQSLGCVGSGGGGHVVYYNGTEKEVLASHEELKDCQHRIQVAAEAVELNGVRVDDAFPLYFGKGVSVNYTYSQDCMRCVESKGSCGSNDTHAFTCYCPDGSNALQCPHRNRNHWRWIVLIVAAAVIGLVALAMAVIFYQRRKKTSYGLSYTQPRSLSSDPSSWKDTEKGSQYFGAHLFTYTELEEATNFFDPSRELGDGGFGTVYYGQLPDGRCIAVKRLYENNYRRVEQFMNEIEILTRLRHKNLVSLFGCTSRHSRELLLVYEYIANGTVADHLHGNRAKAGTLPWHIRMNIALETATALAYLHDSEIIHRDVKTNNILLDSNFVVKVADFGLSRLFPNNVTHVSTVPQGTPGYVDPEYHECYQLTVKSDVYSFGVVLVELISSLPAVDITRHRHEINLSTMAINKIQNQALHELVDKNLGFDSDLKVRKMINAVAELAFQCLQSSKDMRPSMQEVVDTLKDIQSDGEYKGQSHAEVMDISSTADDAVLLKDDPPPPSPASTVGSKSTTPNASG* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4115 677 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 18 666 - -
Amo05g4115 677 Pfam Wall-associated receptor kinase galacturonan-binding 44 102 IPR025287 GO:0030247
Amo05g4115 677 Gene3D Transferase(Phosphotransferase) domain 1 428 641 - -
Amo05g4115 677 SMART serkin_6 351 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4115 677 Gene3D Phosphorylase Kinase; domain 1 323 427 - -
Amo05g4115 677 Pfam Protein kinase domain 354 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4115 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Amo05g4115 677 Pfam Wall-associated receptor kinase C-terminal 181 261 IPR032872 -
Amo05g4115 677 MobiDBLite consensus disorder prediction 644 677 - -
Amo05g4115 677 ProSitePatterns Protein kinases ATP-binding region signature. 357 379 IPR017441 GO:0005524
Amo05g4115 677 ProSiteProfiles Protein kinase domain profile. 351 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4115 677 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 18 666 IPR044652 -
Amo05g4115 677 SUPERFAMILY Protein kinase-like (PK-like) 328 623 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4115 Amo-Chr5 109478212 109483596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4115 48 677 Receptor kinase-like Gene Family AT1G25390 45.062 4.73e-157 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Amo05g4115 Pkinase 4.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4115 - - gmx:100794703 673.7