Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4113 ATGTCACCAGCATCACAAGAAAAATACTGCTTTCCAACAAAGGGTAACCAAGATATTGAAACTTTCTTAAAAAATCATGGAGTGTTAACTACAAAAAGATATAAATTCTCTGATGTGAAGAAAATGACCAACTCCTTCAAAGTTAAACTAGGACAAGGTGGTTTTGGTGTTGTATACAAGGGAAAGTTATCCAATGATTTTGATGTGGCAGTCAAAATGTTGAATCCATCCAAAGGAAATGGTGAAGAATTTATTAACGAGGTAGCTAGCATTAGTAGAACTTCTCATGTTAATGTTGTCGCCCTTCTTGGATTTTGCTTAGAAGGTCACAAGAAAGTTCTCATCTATGAATTTATGTCCAATGGTTCCCTTGACAATTTTATTTACAAAAAGAACCCTAAGAATACACCACTCTTGAGCTGGGATAATTTATATCAAATTTCCATAGGGATTGCTAGAGGATTGGAGTATTTGCACAGAGGATGCAACATTCTTATTTTACATTTTGACATAAAACCACATAATATTCTTTTGGATGAAAACTTTTGTCCTAAGATATCAGATTTTGGGCTAGCAAAACTTTGTCCTAGAAAAGAAAGTCATATTTCAGTGTCCGAAACTAGAGGAACAATAGGGTACATAGCTCCAGAAGTGTGGAGTAGACATCTCGGCAGAGTTTCACATAAATCTGATGTTTATAGCTATGGAATGATGCTTCTAGAAATGGTAGGAATGAAGGAGAACATCCTTGCAAAGACAAGTCACACAAGCGAGATGTACTTCCCTGATTGGATATACAAAAGGCTTGATCAAGGAACTCAACTGGGACCTGATGATGATGGGGAAGTGGCCATAGAGGAAGATGATGTTGTTAAGAAAATGACAATGGTGGGTTTATGGTGCATTCAACCAATTCCAAATGACAGACCAACAATGAGTAGAGTTGTAGAAATGTTGGAAGGCAGCATGAATTCCCTGGAAATGCCACCAAGACCTGTTCTGTCTTCAATAAGAGTGGCGGTAGAATCTTCTTCTAATGTTTTATCGTTGGTAGAATCTTCTTCTGTTGTATCAGTTGTAGAATCTTCTGCTAGTGTAACTTAG 1104 0.3696 MSPASQEKYCFPTKGNQDIETFLKNHGVLTTKRYKFSDVKKMTNSFKVKLGQGGFGVVYKGKLSNDFDVAVKMLNPSKGNGEEFINEVASISRTSHVNVVALLGFCLEGHKKVLIYEFMSNGSLDNFIYKKNPKNTPLLSWDNLYQISIGIARGLEYLHRGCNILILHFDIKPHNILLDENFCPKISDFGLAKLCPRKESHISVSETRGTIGYIAPEVWSRHLGRVSHKSDVYSYGMMLLEMVGMKENILAKTSHTSEMYFPDWIYKRLDQGTQLGPDDDGEVAIEEDDVVKKMTMVGLWCIQPIPNDRPTMSRVVEMLEGSMNSLEMPPRPVLSSIRVAVESSSNVLSLVESSSVVSVVESSASVT* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4113 367 SUPERFAMILY Protein kinase-like (PK-like) 27 320 IPR011009 -
Amo05g4113 367 SMART serkin_6 44 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4113 367 Gene3D Transferase(Phosphotransferase) domain 1 119 328 - -
Amo05g4113 367 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 5 344 - -
Amo05g4113 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Amo05g4113 367 ProSiteProfiles Protein kinase domain profile. 44 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4113 367 PANTHER RUST RESISTANCE KINASE LR10-RELATED 5 344 IPR045874 GO:0004672
Amo05g4113 367 Gene3D Phosphorylase Kinase; domain 1 12 118 - -
Amo05g4113 367 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524
Amo05g4113 367 Pfam Protein tyrosine and serine/threonine kinase 46 319 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4113 Amo-Chr5 109473457 109474560 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4113 27 349 Receptor kinase-like Gene Family AT1G66910 57.231 5.49e-129 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo05g4113 PK_Tyr_Ser-Thr 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4113 - - ahf:112751085 575.089