Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4109 ATGGATAATCATATCGATATCCATATGCATATCCCCGTAAGGAGAATGATATTTTTGTTGTTGCTAATAAACAGTTTGACACCATCGCTTTCTCAACAACCACTTTCCAACCGCTACTTCCTTTGCAAGAAACAGCTGTACAACTGCGGAACCATTTCCAACATATCCTATCCTTTCTGGGGAGTAGACCGGCCGCGGTACTGCGGCGGTGGCGACCAATTCAACCTCACCTGCGAGCTTGGAACTGGCCAGTTCGCTTCCATTCAAATCGCCTCACAGAAATTCCAGGTGATCCATATTGATGGCGTACAGAACAAGATGAGAATGATACCCATGCCACCAATCGTGAAACACGAATTTTGTTCCATGAAACGCGACTTCAACCTGAGTAGCCCCTCCTTCTGGTACTCGGAAACTGTCCAGAACATCACCATATTCTACGATTGTCCCGCTGGATTTTCCAACTTCACGTGTCCGTCCTCATCAAATCATCGGAACAAAAAGAATAATAATGTTGTGTTCTATGAGGGTGTGGAAGAGCAGGTGTTGAAAGAGCACCCGGAGCTGAAGGAATGCGGGCGTAGTTTGCGAGTGGCAACTGATGAGGGTGCTCTGCACCCTAATGTTACAGTTGATAATCAAATCATTGAAGCCCTGAATTGGGGTTTCCATATGAACTATAGTTTCCCAGAAGAATGCAAGAGATGCATGAGGAGTGAGGGAGTTTGCGGAAGCAATAATTCTTCCCCAGACGGATCTAACGCTGCCCTCTCTTGTTATCTTCCACGTCGCACAAGCAATCGTTGGCAATGGAAATTAAGGCATATCATAGTAGGTTTTATAGCCATAGTGATTCCAGGATTAGTGTTGATATATATCTGTACAGTTTGTTGCTTAAGATACAAATCATCAAGCTGGGAAGAAGTATTTTGGTTCACAACGAAAAGTAACCAAGATATTGAAGCAATCTTAAAAAGTCATGGAGCACTAAGTCTCAAAAGATATAAATTCTGCGATGTGAAGAAAATGACTAGCTTCTTCAAAGTTAAACTTGGACAAGGTGGTTTTGGTACTGTATACAAAGGAAAGCTACTAAATGGTTCTGATGTGGCTGTAAAAATATTGAATCTCTCCAAAGGAAAGGATAAAGAATTTATCAATGAAGTAGCTAGCATTAGCAAAACATCTCACATAAATATTGTTACCCTTTTTGGGTTTTGCTTAGAAGGTAACAAAAGAGCACTTATTTATGAGTTTATGTCTAATGGTTCTCTTGATACATTTATTTACAAAAAGGGACACTATGAAGGCACTCCATCCTTGAATTGGGATCAGTTATATCAAATTGCAATAGGAATAGCTAAAGGGCTAGAGTATTTGCATAAAGAATGTAACATTCGAATTTTTCATTTTGACATAAAGCCGCATAATATTCTTTTGGATGAAAACTTTTGCCCTAAGATATCAGATTTTGGGCTAGCAAAACTCAGTCTTAGAAGTGATGACAGTGTCATTTCCATGTCTGATGCTAGAGGAACCATGGGATATGTGGCTCCAGAAATGTGGAATAAACATCTTGGTGGAATTTCTCATAGATCAGATGTTTATAGTTATGGAATGATGCTACTAGAAATTGTGGGCGGAAGAAAGAACATTCATGCAGAAGCAAATCACACAAGTGAGATATATTTTCCTTATTGGATACACAAAAGGCTTGAACAAGGCACTCAATTGGGCAATAACGAAAACATTGGCATTGCAGAAAATGATATTGTCAAAAGAATGACTATAGTGGGTTTATGGTGCATTCAAACGTTGCCAAATGATAGGCCATCAATAAGTAGAGTTATAGATATAATGGATTGCCACGTACATAGTGAACTCTCTATGGTGGTTACATACATAGGGATCACCATCTCTTTGTTCCTGATGGCCGCTTTGCCACCATCCCTTTCTCAATCACCAACTTCCAATAATTATCACTTCCTGTGTAGCCAGCCACTTAAGTGTGGCGCACTAGAATGTGGCGGCGATGAAAATCTCCAGCTTACCTACTGCAAGGAGGAGAATGATGATGGATACGAAAAAAACCACGCTTACATTAACATGGGCTCACAACAATTCAGTGTGGAGAATGAGGATCCCCTAATTAACTATTACACGGTGAAATTGGTGCCCATGCCACGTGACGGAGAACCTGATGTTTGCTCTCTCAGTTTCGATTATTTTCTGAATGACACTCTATTCACCTATAACCAAACAGTGCACAACATCACCATATTCTATGATTGCAACTACTCCTCTATATATTCGGATAACCATAGCCTAGGCTGCGTTGGTAGCGGTGGTGGTGGTCATGTTGTATATTATAACGGTACGGAAAATGGGGTGCTGGCAAGTCATCAAGACCTCAAGAATTGCCGTCATCGTATCCAAGTAGCCGCTGAGGCTGTTTTCTTGAAGGGGGACAGAGGTGGTGAAGCTTCTGCTCTGCCTTTCGGTGAAGGTGTATTGGTAAACTCTACTTTTTCTCAAGATTGTAAGAGATGCGTGGACAGTCGAGGAAGCTGCGGGAGCAACCATACGCATCCATTTACCTGCTATTGCCCTGATGAATCTAACGCCCTTCAATGTCCTCATCGTAACAGTTCAGGTGTAACAGTTGCAGTAATTACAGTTTTCAGACTGTTGGCTACTTGTTTAGCGCCAAAATCATTGAAGATAAAGAGTAACCAACAGATTGAGACCTTCTTGAAAAATCATGGAGTCTTAACTCTGAAGAGATATAAATTTTCGGATGTGAAGAAAATGACCAACTCTTTCAAAGATAAATTAGGACAAGGCGGTTTTGGTGCTGTATATAAGGGAAAGTTATCCAATGGTTTTGATGTGGCTGTCAAAATATTGAATCCATCCAAAGGAAATGGTGAAGAATTTATTAACGAGGTAGCTAGCATTAGTAGAACTTCTCATGTTAATGTTGTCACTCTTCTTGGATTTTGTTTTGAAGGTCATAAGAAAGTTCTCATCTATGAGTTTATGTCCAATGGTTCCCTTGACAATTTTATTTACAAAAAGGACCCTAAGAGTACTCCACTCTTGAGTTGGGATAATTTGTATCAAATTTCCATAGGGATTGCTAGAGGATTGGAGTATTTGCATAGAGGATGCAACATTCAAATTTTACATTTTGACATAAAACCACATAATATTCTTTTGGACGAAAACTTTTGTCCCAAAATATCAGATTTTGGGCTAGCAAAGCTTTGTCCTAGAAAAGAAAGTCATATTTCAATGTCTGAAACTAGAGGAACAATAGGGTACATAGCTCCAGAAGTGTCAAATAGACATTTCGGTAGAGTTTCATATAAATCTGATGTTTATAGCTATGGAATGATGCTTCTAGAAATGGTAGGAATGAAGGAGAAGAACATAACTGCAGAACCAAGTCAATCAAGCGAGATGTACTTCCCTGATTGGATATACAAAAGGCTTGAGCAAGGCAGTCAATTAGGACCAGATGATGATGGGGAGGTGATCATAGAGGAAAATGATGTTGTTAAGAAAATGACAGTGGTAGGTTTATGGTGCATTCAACCAATTCCAGATGATAGACCAACAATGAGCAAAGTTGTAGAAATGTTGGAAGGCAGCATGAATTTCCTGGAATTGCCTCCTAGGCCTGTTCTGTCTTCTCAGATAAGGTTGGTGATAGAATCTTCTACTATTGTATCGTCATTGACAGAATCTTCTTCTATTGTAAGTTAA 3768 0.3981 MDNHIDIHMHIPVRRMIFLLLLINSLTPSLSQQPLSNRYFLCKKQLYNCGTISNISYPFWGVDRPRYCGGGDQFNLTCELGTGQFASIQIASQKFQVIHIDGVQNKMRMIPMPPIVKHEFCSMKRDFNLSSPSFWYSETVQNITIFYDCPAGFSNFTCPSSSNHRNKKNNNVVFYEGVEEQVLKEHPELKECGRSLRVATDEGALHPNVTVDNQIIEALNWGFHMNYSFPEECKRCMRSEGVCGSNNSSPDGSNAALSCYLPRRTSNRWQWKLRHIIVGFIAIVIPGLVLIYICTVCCLRYKSSSWEEVFWFTTKSNQDIEAILKSHGALSLKRYKFCDVKKMTSFFKVKLGQGGFGTVYKGKLLNGSDVAVKILNLSKGKDKEFINEVASISKTSHINIVTLFGFCLEGNKRALIYEFMSNGSLDTFIYKKGHYEGTPSLNWDQLYQIAIGIAKGLEYLHKECNIRIFHFDIKPHNILLDENFCPKISDFGLAKLSLRSDDSVISMSDARGTMGYVAPEMWNKHLGGISHRSDVYSYGMMLLEIVGGRKNIHAEANHTSEIYFPYWIHKRLEQGTQLGNNENIGIAENDIVKRMTIVGLWCIQTLPNDRPSISRVIDIMDCHVHSELSMVVTYIGITISLFLMAALPPSLSQSPTSNNYHFLCSQPLKCGALECGGDENLQLTYCKEENDDGYEKNHAYINMGSQQFSVENEDPLINYYTVKLVPMPRDGEPDVCSLSFDYFLNDTLFTYNQTVHNITIFYDCNYSSIYSDNHSLGCVGSGGGGHVVYYNGTENGVLASHQDLKNCRHRIQVAAEAVFLKGDRGGEASALPFGEGVLVNSTFSQDCKRCVDSRGSCGSNHTHPFTCYCPDESNALQCPHRNSSGVTVAVITVFRLLATCLAPKSLKIKSNQQIETFLKNHGVLTLKRYKFSDVKKMTNSFKDKLGQGGFGAVYKGKLSNGFDVAVKILNPSKGNGEEFINEVASISRTSHVNVVTLLGFCFEGHKKVLIYEFMSNGSLDNFIYKKDPKSTPLLSWDNLYQISIGIARGLEYLHRGCNIQILHFDIKPHNILLDENFCPKISDFGLAKLCPRKESHISMSETRGTIGYIAPEVSNRHFGRVSYKSDVYSYGMMLLEMVGMKEKNITAEPSQSSEMYFPDWIYKRLEQGSQLGPDDDGEVIIEENDVVKKMTVVGLWCIQPIPDDRPTMSKVVEMLEGSMNFLELPPRPVLSSQIRLVIESSTIVSSLTESSSIVS* 1256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4109 1255 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE, PROTEIN KINASE RLK-PELLE-LRK10L-2 FAMILY-RELATED 637 902 - -
Amo05g4109 1255 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE, PROTEIN KINASE RLK-PELLE-LRK10L-2 FAMILY-RELATED 909 1246 - -
Amo05g4109 1255 SMART serkin_6 345 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4109 1255 SMART serkin_6 939 1222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4109 1255 PANTHER RUST RESISTANCE KINASE LR10-RELATED 909 1246 IPR045874 GO:0004672
Amo05g4109 1255 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1061 1073 IPR008271 GO:0004672|GO:0006468
Amo05g4109 1255 ProSitePatterns Protein kinases ATP-binding region signature. 945 967 IPR017441 GO:0005524
Amo05g4109 1255 PANTHER RUST RESISTANCE KINASE LR10-RELATED 637 902 IPR045874 GO:0004672
Amo05g4109 1255 SUPERFAMILY Protein kinase-like (PK-like) 921 1216 IPR011009 -
Amo05g4109 1255 Gene3D Transferase(Phosphotransferase) domain 1 420 632 - -
Amo05g4109 1255 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Amo05g4109 1255 Pfam Wall-associated receptor kinase galacturonan-binding 42 109 IPR025287 GO:0030247
Amo05g4109 1255 Pfam Protein tyrosine and serine/threonine kinase 348 618 IPR001245 GO:0004672|GO:0006468
Amo05g4109 1255 Pfam Protein tyrosine and serine/threonine kinase 941 1215 IPR001245 GO:0004672|GO:0006468
Amo05g4109 1255 Pfam Wall-associated receptor kinase C-terminal 799 871 IPR032872 -
Amo05g4109 1255 Pfam Wall-associated receptor kinase C-terminal 158 249 IPR032872 -
Amo05g4109 1255 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE, PROTEIN KINASE RLK-PELLE-LRK10L-2 FAMILY-RELATED 21 626 - -
Amo05g4109 1255 Gene3D Phosphorylase Kinase; domain 1 310 419 - -
Amo05g4109 1255 Gene3D Phosphorylase Kinase; domain 1 900 1013 - -
Amo05g4109 1255 SUPERFAMILY Protein kinase-like (PK-like) 336 618 IPR011009 -
Amo05g4109 1255 ProSiteProfiles Protein kinase domain profile. 345 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4109 1255 ProSiteProfiles Protein kinase domain profile. 939 1222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4109 1255 CDD STKc_IRAK 945 1217 - -
Amo05g4109 1255 Gene3D Transferase(Phosphotransferase) domain 1 1014 1222 - -
Amo05g4109 1255 PANTHER RUST RESISTANCE KINASE LR10-RELATED 21 626 IPR045874 GO:0004672
Amo05g4109 1255 ProSitePatterns Protein kinases ATP-binding region signature. 351 373 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4109 Amo-Chr5 109443512 109452563 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4109 39 621 Receptor kinase-like Gene Family AT1G66910 36.640 4.79e-110 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo05g4109 PK_Tyr_Ser-Thr 6.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4109 - - ahf:112751085 856.67