Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4107 ATGCATAAGCGGCATATATATACGCTGCTTACCATCTCTTTGTGGATGTTATTGCTAACAGCTTTGCCGCCATGCCTGTCTCAACTTTGTAGCCAGCAGCCATACAAGTGCAGAGGACTGCCTGACCTATACTACCCATTTTGGGGAAATACCCGGCCCTCTTACTGTGGCGGCGGCCACCAATTCAACCTAACCTGCTACAACTCCGACCACACATTCATTTCAATGGGGTCACAACAATTCGAAGTGGTGGACATTGACACCCAAGCTCACATCATGACAATGGTGCCGAAAGAGTATGATGTTTGCTCTCCCCGCTTGGACTTTTCCCTCAGTCCCCTCTTCTGGTACGCCAAAACTGTCCACAACATCACCATATTCTACGATTGTCCCTCGGAGGTAGTTTCTTCTGTGAACAACTTTACCTGCGGAGCGGAGAATAATCAGACTGATGGTGTATACTATGTTGGTGGGGAAGATGAGTTGTTGCAACAGAATGTAGAGCTACGGAAATGCCGGCGGCGAAAGCAAGTTCCGGCGGACGAGAGCGCTCCTTCCCCTGATGGTGGTGTGAATGCTCTGTATGCAGCTTTAGAGGTGGGGTTTCAGGTCAACTATGTGGTTTCTAAGGAGTGTATGACATGCCTCGCAACTGATGGTGTTTGCGGCAGATTTGATGATGATCATTTCATCTGCTCTCATCGCAAAAGTAATGCGTTGCACGGGAAAATGCCAGTTATCATTGGTGTTACGGGTAGTGTGGCTGGACTAATATTAATATGCATCACTATTTGGTGCTTGTTGAAATTATTCAAGTCATCTAGATGGCAAGAAAGATTTTGGTTAAGGACTAATAGGAACCAAGATATTGAGGCCTTCTTAAAAAGTCATGGAGCTCTAACGTTAAAGAGATATAAATTCTCAGCATTGAAGAAACTCACCAACTCCTTCAAATGTAAATTGGGTAAAGGAGGTTTTGGTGTTGTGTACAAAGGATTGTTACCCAACGGATGTCCAGTGGCTATAAAGATTTTGAACCCATCCAAAGGAAACAATGAAGAATTTATTAACGAGGTAGCTAGCATCAGTAAAACTTCTCATGTTAACGTTGTCACTCTTCTTGGATTTTGTTTAGAAGGTTACAAAAAGGCTCTCATCTATGAATTTATGTTTAATGGTTCTTTAGAAAAGTTTATTTGCACTAATAATAGAATACCAATTGCTCCATCGTTAAGTTGGAGCAAATTGTATCAAATTGCAATAGGAGTAGCGAGAGGGTTAGAGTACTTACACAAAGGATGCAATACTCGAATCTTACATCTTGACATAAAGCCACATAATATTCTTTTAGACGAGAATTTTTGTCCTAAGATATCAGATTTTGGATTATCAAAATTGTGCCTCAAGAAAGAAAGTATTATTTCCATATCAGATGCTCGAGGAACAATAGGATATATAGCTCCAGAAGTGTGGAATAAAAATTTTGGTGGAATTTCTTACAAATCTGATGTTTATAGCTACGGAATGATGCTACTAGAAATAGTTGGAGGAAGGAAGAAGAGTGACAATGCAGAAGGCTCAAGTAGTGAATATTTTCCAGACTGGGTATATAGAAGGCTTAAGGAAGTAACTCATGGGGAGGTAGCCACAGAAGAAAATGTGATCATTAGAAGAATGACTATGGTAGGTCTATGGTGCATTCAAAGTATTCCAAGTGATAGACCGACAATGAATAAAGTGTTAGATATGTTGGAAGGCAATATTGATACCATAGGAATCCCTCCAAAACTTGTTGTGTCTTCTCCAGTTAGATCAGAGTGA 1821 0.4091 MHKRHIYTLLTISLWMLLLTALPPCLSQLCSQQPYKCRGLPDLYYPFWGNTRPSYCGGGHQFNLTCYNSDHTFISMGSQQFEVVDIDTQAHIMTMVPKEYDVCSPRLDFSLSPLFWYAKTVHNITIFYDCPSEVVSSVNNFTCGAENNQTDGVYYVGGEDELLQQNVELRKCRRRKQVPADESAPSPDGGVNALYAALEVGFQVNYVVSKECMTCLATDGVCGRFDDDHFICSHRKSNALHGKMPVIIGVTGSVAGLILICITIWCLLKLFKSSRWQERFWLRTNRNQDIEAFLKSHGALTLKRYKFSALKKLTNSFKCKLGKGGFGVVYKGLLPNGCPVAIKILNPSKGNNEEFINEVASISKTSHVNVVTLLGFCLEGYKKALIYEFMFNGSLEKFICTNNRIPIAPSLSWSKLYQIAIGVARGLEYLHKGCNTRILHLDIKPHNILLDENFCPKISDFGLSKLCLKKESIISISDARGTIGYIAPEVWNKNFGGISYKSDVYSYGMMLLEIVGGRKKSDNAEGSSSEYFPDWVYRRLKEVTHGEVATEENVIIRRMTMVGLWCIQSIPSDRPTMNKVLDMLEGNIDTIGIPPKLVVSSPVRSE* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4107 606 Pfam Protein tyrosine and serine/threonine kinase 317 583 IPR001245 GO:0004672|GO:0006468
Amo05g4107 606 Gene3D Transferase(Phosphotransferase) domain 1 390 591 - -
Amo05g4107 606 PANTHER RUST RESISTANCE KINASE LR10-RELATED 10 605 IPR045874 GO:0004672
Amo05g4107 606 SUPERFAMILY Protein kinase-like (PK-like) 301 585 IPR011009 -
Amo05g4107 606 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
Amo05g4107 606 SMART serkin_6 315 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4107 606 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE, PROTEIN KINASE RLK-PELLE-LRK10L-2 FAMILY-RELATED 10 605 - -
Amo05g4107 606 Pfam Wall-associated receptor kinase C-terminal 162 233 IPR032872 -
Amo05g4107 606 ProSitePatterns Protein kinases ATP-binding region signature. 321 343 IPR017441 GO:0005524
Amo05g4107 606 Gene3D Phosphorylase Kinase; domain 1 278 389 - -
Amo05g4107 606 ProSiteProfiles Protein kinase domain profile. 315 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4107 606 Pfam Wall-associated receptor kinase galacturonan-binding 30 95 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4107 Amo-Chr5 109425270 109429155 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4107 14 599 Receptor kinase-like Gene Family AT1G66910 40.625 8.86e-142 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo05g4107 PK_Tyr_Ser-Thr 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4107 - - gmx:106794113 626.706