Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4094 ATGTTGAAACTTGCATTGTTCTTCCTCTTAGTTCTGTTCCCATTGTTGTTCCATAGTTCCTTAGGCAACAACATCATCAACACCACTTCATCTTCAACACTTTGTGGCACAAAATCTTGCCCCAATGGACCTAACATAAGTTACCCTTTTTGGCTCTCACATGGTTCTCCCCCTCAAGAATATTGTGGCTACCCAGAATTTGGTTTAATATGCTTAGACGATGGCAACACCATTTTCTCTCCACCACCAGGTTTATACTATTATGTTAAGCACATAGACTATGATAACCATAGCATTAAGCTTATTGATTTCGACACCACAAACCAAACATGTCCAAGGGCACTTCATGGTTTTCCAATAGGGAACTTACCTCTTTCTCATTCTTCATTGAACTTGAACCTTAGCTTTTACTATAACTGTTCTACTTCTACTACTTCACACCCTTCTAATGTTCCTGATATAAGTTGTTTGAGGCAAGGGTCAAAAGAGTCTTTTGTGTTCTTGAAGGGGAATGAGAGCAAGGGTTTTGATTGGTCAGAGAGGTGTGAGGAGAATGTTGATGTGACAGTGATGAAGGATGAGATTAGTAGTAATGGTGGTGAATATGGTTTGGTGAGTGAGTTTGGTAGGGCTATGAATGAAGGGTTTGTGCTTGAATGGGAAACTGAAGAGACTTGCAAAGAGTGTGAGGCTTCTGAGGGATATTGTGGATACAGTAGTACTAACAAACAGATCTTGTGTTTCTGCAAGGATGGTACTGTAAGGACCAACAATTGTCAAGTAGCAGGGGAAAGCAAGAGCAGGTTGTCGAAATTAATTATAGGTTTCATAGCTGCAGGAATTGGAGTATTGCCTATAACATGCATCATACTTTACATTTTTAGACACAAACTATCACCAATCATGCCTGAAATTTTGAAGATCAAAAATAACGACCAAGATATTGAGGCCTTCATGAAGACTCATGGACCCATAGCCATAAAAAGATACACTTATTCAGATATCAAGAAGATGACCAATTCTTTCGAGTCGAAACTCGGGGAAGGTGGTTATGGAGAAGTATACAAAGGATTCCTTAACAATGGTGGTCTTGTGGCTGTAAAGCTTCTCAAAGCTTCCAAAGGGAATGGTGAGGAGTTCATCAATGAGGTCACGAGTATTAGTAAAACATCTCATGTAAACATTGTTGCATTGCTCGGATTCTGTCTCGAAGGTAACAAGAAAAAAGCTCTTGTTTATGAATTCATGCTGAATGGATCACTTGAAAAGTATATACATAACAATGATCCTATAACCAATCCACCTTTGAGTTGGGAAAGGCTACACCGGATTGCGAAAGGGATAGCTCGAGGGCTAGAATACTTGCACCGAGGTTGCAACACAAGGATTCTCCATTTCGACATAAAACCAAATAACATCCTCCTAGACAAGAACTTTAACCCTAAAATCTCGGATTTCGGGTTGGCTAAGCTTTGCTCAAAGACACACAGCATTGTCACAATGTTGGATGCTAGAGGGACAATAGGGTACATAGCTCCAGAAGTATGGAACAGACACTTTGGTGGAGTGTCGCATAAATCTGATGTATATAGTTACGGAATGATGATTCTGGAAATGGTAGGAGGGAAGCATAATAACACAAATGCTGAGGTAACTAGTCATTCTAGTGAGTTGTATTTTCCTCATTGGATATACAAGCATATTGAAAGTGACAAGAGTAGTGTAGCATGGCAAGGTGCTACTATGAGCAATGAGGAAGGTGAGATAGTGAGAAAAATGATCATTGTAGGGTTGTGGTGCATTCAAACAATTCCATCAGAAAGACCTCCAATGAGTAGGGTCATTGAAATGCTTGAAGGAAGCATTGATTTGTTGCAAAGTCCACCTAAGCCTTTTAATTTTTCCCCAACTCAAACCAAAGTGGAATCTTGTACAACTTCTAGCACGAGTGATTCATTTTCCCCTGCTGATTAA 1974 0.3982 MLKLALFFLLVLFPLLFHSSLGNNIINTTSSSTLCGTKSCPNGPNISYPFWLSHGSPPQEYCGYPEFGLICLDDGNTIFSPPPGLYYYVKHIDYDNHSIKLIDFDTTNQTCPRALHGFPIGNLPLSHSSLNLNLSFYYNCSTSTTSHPSNVPDISCLRQGSKESFVFLKGNESKGFDWSERCEENVDVTVMKDEISSNGGEYGLVSEFGRAMNEGFVLEWETEETCKECEASEGYCGYSSTNKQILCFCKDGTVRTNNCQVAGESKSRLSKLIIGFIAAGIGVLPITCIILYIFRHKLSPIMPEILKIKNNDQDIEAFMKTHGPIAIKRYTYSDIKKMTNSFESKLGEGGYGEVYKGFLNNGGLVAVKLLKASKGNGEEFINEVTSISKTSHVNIVALLGFCLEGNKKKALVYEFMLNGSLEKYIHNNDPITNPPLSWERLHRIAKGIARGLEYLHRGCNTRILHFDIKPNNILLDKNFNPKISDFGLAKLCSKTHSIVTMLDARGTIGYIAPEVWNRHFGGVSHKSDVYSYGMMILEMVGGKHNNTNAEVTSHSSELYFPHWIYKHIESDKSSVAWQGATMSNEEGEIVRKMIIVGLWCIQTIPSERPPMSRVIEMLEGSIDLLQSPPKPFNFSPTQTKVESCTTSSTSDSFSPAD* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4094 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Amo05g4094 657 CDD STKc_IRAK 346 620 - -
Amo05g4094 657 PANTHER - 27 650 - -
Amo05g4094 657 Pfam Wall-associated receptor kinase C-terminal 160 252 IPR032872 -
Amo05g4094 657 MobiDBLite consensus disorder prediction 629 657 - -
Amo05g4094 657 ProSiteProfiles Protein kinase domain profile. 340 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4094 657 ProSitePatterns Protein kinases ATP-binding region signature. 346 368 IPR017441 GO:0005524
Amo05g4094 657 Pfam Protein kinase domain 343 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4094 657 Pfam Wall-associated receptor kinase galacturonan-binding 35 103 IPR025287 GO:0030247
Amo05g4094 657 SUPERFAMILY Protein kinase-like (PK-like) 321 619 IPR011009 -
Amo05g4094 657 Gene3D Phosphorylase Kinase; domain 1 312 415 - -
Amo05g4094 657 PANTHER RUST RESISTANCE KINASE LR10-RELATED 27 650 IPR045874 GO:0004672
Amo05g4094 657 Gene3D Transferase(Phosphotransferase) domain 1 416 627 - -
Amo05g4094 657 SMART serkin_6 340 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4094 Amo-Chr5 109233177 109235852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4094 37 631 Receptor kinase-like Gene Family AT5G38260 41.294 9.22e-146 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo05g4094 Pkinase 5.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4094 - - ahf:112802243 1286.17