Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4086 ATGGCGACGCCGTTAACGGGGGTGCAGCACCTAGAGGGAGTGGCGGTGCTGCCGAATCGCGTGAGCAAGGTGGAATCTTCCAATGGCGGCGCATTCAACGGTTCTTCGCAATTGGAGTCGCCAATTTTGATATTCTCGTTCTTCCACAAGGCGATTAGGAACGAGCTCGATGCTTTGCACCGATCGGCCATGGCGTTTGCCACCGGTGATGGTGACCGCTCCGAGCTCCGGCCGCTCTCCGAACGGTACCATTTCATCAGATCGATGTATAGGCACCACTCCAATGCTGAAGATGAGGTGATTTTTCCAGCTTTAGACATACGTGTGAAGAACGTAGCACATACATATTCTCTTGAACACAAGGGGGAAAGCAATCTTTTTGATCATCTATTTGAGCTTCTAAATTCTTCAACCCATAACGATGAAAGTTTCCCAAGGGAGTTAGCATCGTGCACAGGAGCTTTACACACATCAGTTAGTCAACACTTAGCTAAGGAAGAGGAGCAGGTTTTTCCACTGCTCATTGAGAAGTTCTCTCTGGAGGAACAAGCATCTTTAGTTTGGCAATTCCTTTGCAGTATTCCTGTGAATATGATGGCTGAATTTCTTCCATGGCTTTCAACATCTATATCACCTGAAGAATCTCAGGATTTGCGGAAGTACTTAAGCAAAATAGTTCCAGAGGAGACGCTTCTTCAAAAGGTTATTTACACATGGATGGAAGGTAGAAGTAGTGCTAACACAGTTGAAAATGGTGTAGATCATTCTCAAGTTCGATGTAGTCCTAGTCCATTAACCCATCAGATTGGGAAAGTAAAATGTGCATGTGAGTCCACAGGAACGGGGAAAAGGAAATATTCTGGATGTATCATAGATGTTTCTGACACTACCGGAACACATCCTATAGATGAAATATTGCTCTGGCATAATGCAATTAAAAAAGAATTAAATGAGATAGCAGTGGAGACCAGAAAGATACAATTGTCTGGAGATTTTACCAATCTGTCAGCTTTTAATGAAAGGTTGCAATTCATTGCAGAAGTTTGCATATTTCACAGTATTGCTGAGGACAGGGTTATTTTTCCAGCAGTAGACGCAGAGCTATCTTTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTCCGGTGTTTGATTGAAAGAATTCAAGGTGAAGGAGCAACATCTAACTCCGAAGTTGAATTTTATTCCAAGTTGTGCTCACATGCTGATCATATAATGGAAACCATCCAGAGGCATTTCAAGAATGAAGAAGTTCAGGTTCTTCCACTTGCACGGAAGCACTTTAGTATCAAAAGGCAACGTGAACTTCTGTATCAAAGCTTGTGCATGATGCCTCTGAAATTGATTGAACGTGTGCTGCCATGGTTGGTTGGATCATTGACTGAAGATGAAGCAAAGATGTTTCTGAAAAATATGCAATTAGCAGCTCCAGCGACAGACTCTGCTTTAGTCACACTCTTTTGTGGTTGGGCTTGCAAGGCTCGTAACTATGGTCTGTGTTTGTCTTCAAGTGCATTAGGTTGTTGTCGTGCTCAAACATTTGCTGACATTGAAGAGAATATTGTTCAACTCTCCTGTGGTTGTGCTTCTACATCATCTGCTAGAGATTGTTTTCTGTTAACTGGATCAGATTCCCAAAGATCAGTGAAGCGCAACACGACGGAGTTGCACAAGAATGGAGACGTCCCAGAAACTTTAGAAAATGAAAGTATCCAGAAACAATGTTGCAGTCCCCGATCTTGTTGTGTGCCAGCTTTAGGAGTTAACACTAACAATTTGGGGCTCAGTTCACTTTCTACAGCCAAGTCTTTACGCTCCTTGTCTATCGCCTCTTCTGCCCCATCCCTGAATTCTAGTCTTTTCATATGGGAAACAGACAGCAGCCCATGTGATGTAGGATCGACAGAAAGACCAATTGATACCATATTTAAATTCCATAAAGCTATACGCAAAGACTTGGAGTATTTAGATGTTGAGTCTGGGAAGCTTAATGAAGGTGATGAAACTACCATTCACCAATTTAGTGGAAGGTTTCGTCTTCTATGGGGTTTATATAGAGCTCATAGTAATGCTGAAGATGATATAGTATTCCCTGCATTGGAATCCAAAGAGACACTTCATAATGTGAGCCATTCATACATGCTAGACCATAAGCAGGAAGAAAAATTATTTGAAGATATTTCTTGTGTTCTTTCTGAGCTTTCATCGCTTCATGAAGCCATGCAGAAGTCCCACATGTCGGAGAATTTAGATGAAATTAATTTGGGATCTTCTGATGCTAAAGATAGTGATAATATCAGAAAGTACAATGAGCTTGCAACTAAGCTTCAAGGGATGTGCAAATCAATAAGAGTGACCCTGGATCAGCATATTTTTCGGGAAGAACTTGAGCTCTGGCCATTGTTTGGGAAATATTTTACTGTGGAAGAGCAAGACAAGATAGTGGGCCGAATAATTGGAACTACAGGTGCTGAAGTTCTCCAATCTATGTTACCATGGGTAACTTCTGCACTTACTGAAGACGAACAGAACAAAATGATGGACACCTGGAAACAGGCAACTAAGAACACTATGTTCAATGAATGGCTAAATGAATGCTTAAAAGAGAGTCCAGTACCTGTTTCACCAACAGAAACATCAGAGTGTAGCACTTCTCAAAGAGGTGCTGACTATCAAGAAAGCTTGGACCTCAATGATCAGATGTTCAAGCCAGGTTGGAAAGACATATTCCGGATGAATCAGAATGAACTTGAATCAGAGATCCGGAAGGTCTATCGTGACTCAACTCTTGATCCAAGGAGAAAGGCATATCTTGTCCAGAATCTAATGACAAGTCGTTGGATTGCTGCCCAGCAGAAGTTACCAAAAGCTTTATCTGGGGACTCCTCTAATAAAGAAATAGAAGGACGCTCACCATCATTTCGGGACCCAGAGAAGCAAGTTTTGGGTTGTGAGCATTATAAGAGAAATTGTAAGGTTCGTGCAGCTTGTTGTGGCAAGTTATTTACATGCAGATTTTGCCATGACAATGTGAGCGACCACTCAATGGATAGAAAAGCAACATTGGAAATGATGTGTATGGTGTGTCTGACTATACAGCCAGTTGGGCCTGTATGCATGTCTCCTTCATGTAATGGACTTTCAATGGCCAAGTACTATTGCAATATTTGCAAGTTTTTTGATGATGAAAGGAATGTGTATCATTGCCCATATTGCAATATTTGCCGTGTTGGCCAAGGGCTTGGGATTGACTATTTTCATTGCATGAAATGCAATTGTTGCTTGGGAATAAAATCAACATCTCACAAGTGCCTGGAGAAAGGTTTAGAAATGAACTGCCCAATATGCTGTGATGACTTGTTCACATCAAGTGCGACAGTCAGGGCTCTACCATGTGGACATTACATGCATTCAGCTTGCTTTCAGGCATACACATGTAGTCACTACACATGCCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCTCTATTGGCTACTGAGGAGCTTCCTGAAGAGTACAGGAGCCGCTATCAGGATGTACTCTGCAATGACTGTGATAGAAAGGGCACTTCACGTTTTCACTGGTTATATCACAAATGTGGATTCTGTGGCTCCTACAATACTAGGGTGATCAAGACTGAGGCTACCAATTCTAGCTGCTCCTAG 3720 0.421 MATPLTGVQHLEGVAVLPNRVSKVESSNGGAFNGSSQLESPILIFSFFHKAIRNELDALHRSAMAFATGDGDRSELRPLSERYHFIRSMYRHHSNAEDEVIFPALDIRVKNVAHTYSLEHKGESNLFDHLFELLNSSTHNDESFPRELASCTGALHTSVSQHLAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSTSISPEESQDLRKYLSKIVPEETLLQKVIYTWMEGRSSANTVENGVDHSQVRCSPSPLTHQIGKVKCACESTGTGKRKYSGCIIDVSDTTGTHPIDEILLWHNAIKKELNEIAVETRKIQLSGDFTNLSAFNERLQFIAEVCIFHSIAEDRVIFPAVDAELSFFQEHAEEESQFNDFRCLIERIQGEGATSNSEVEFYSKLCSHADHIMETIQRHFKNEEVQVLPLARKHFSIKRQRELLYQSLCMMPLKLIERVLPWLVGSLTEDEAKMFLKNMQLAAPATDSALVTLFCGWACKARNYGLCLSSSALGCCRAQTFADIEENIVQLSCGCASTSSARDCFLLTGSDSQRSVKRNTTELHKNGDVPETLENESIQKQCCSPRSCCVPALGVNTNNLGLSSLSTAKSLRSLSIASSAPSLNSSLFIWETDSSPCDVGSTERPIDTIFKFHKAIRKDLEYLDVESGKLNEGDETTIHQFSGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYMLDHKQEEKLFEDISCVLSELSSLHEAMQKSHMSENLDEINLGSSDAKDSDNIRKYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKYFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTEDEQNKMMDTWKQATKNTMFNEWLNECLKESPVPVSPTETSECSTSQRGADYQESLDLNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKLPKALSGDSSNKEIEGRSPSFRDPEKQVLGCEHYKRNCKVRAACCGKLFTCRFCHDNVSDHSMDRKATLEMMCMVCLTIQPVGPVCMSPSCNGLSMAKYYCNICKFFDDERNVYHCPYCNICRVGQGLGIDYFHCMKCNCCLGIKSTSHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLATEELPEEYRSRYQDVLCNDCDRKGTSRFHWLYHKCGFCGSYNTRVIKTEATNSSCS* 1240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4086 1239 Pfam CHY zinc finger 994 1069 IPR008913 GO:0008270
Amo05g4086 1239 ProSiteProfiles Zinc finger CTCHY-type profile. 1059 1122 IPR017921 -
Amo05g4086 1239 CDD Hr-like 650 810 - -
Amo05g4086 1239 Pfam Hemerythrin HHE cation binding domain 300 434 IPR012312 -
Amo05g4086 1239 Pfam Hemerythrin HHE cation binding domain 648 811 IPR012312 -
Amo05g4086 1239 Pfam Hemerythrin HHE cation binding domain 49 174 IPR012312 -
Amo05g4086 1239 ProSiteProfiles Zinc finger RING-type profile. 1123 1165 IPR001841 -
Amo05g4086 1239 Pfam Zinc-ribbon 1170 1227 IPR039512 -
Amo05g4086 1239 ProSiteProfiles Zinc finger CHY-type profile. 987 1056 IPR008913 GO:0008270
Amo05g4086 1239 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 23 1238 - -
Amo05g4086 1239 Gene3D nmb1532 protein domain like 644 886 - -
Amo05g4086 1239 CDD Hr-like 303 432 - -
Amo05g4086 1239 CDD RING-H2_Pirh2 1122 1165 - -
Amo05g4086 1239 SMART ring_2 1123 1164 IPR001841 -
Amo05g4086 1239 CDD Hr-like 44 172 - -
Amo05g4086 1239 SUPERFAMILY CHY zinc finger-like 987 1051 IPR037274 GO:0008270
Amo05g4086 1239 SUPERFAMILY RING/U-box 1120 1176 - -
Amo05g4086 1239 Pfam Ring finger domain 1122 1164 IPR001841 -
Amo05g4086 1239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1118 1167 IPR013083 -
Amo05g4086 1239 Gene3D nmb1532 protein domain like 38 192 - -
Amo05g4086 1239 Gene3D nmb1532 protein domain like 303 450 - -
Amo05g4086 1239 Gene3D - 1194 1235 - -
Amo05g4086 1239 PANTHER CHY ZINC FINGER PROTEIN 23 1238 - -
Amo05g4086 1239 SUPERFAMILY Zinc hairpin stack 1060 1116 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4086 Amo-Chr5 109136633 109145953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4086 1 1239 C2H2 Transcription Factor Family AT3G18290 66.481 0.0 1671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4086 K16276 - gmx:100791354 2168.27