Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4079 ATGGATTGCATGATTTCGGCGCTCAAATCGAGGGTAAACCTGCTGGAAAATTCTCCTCCCGTGGCCGAGTTTTTCAGCAATGAACACGCCGAGTCAACTCAGTTGATGTTTGAAAACTCGCTCTGTTTCATGGTAGGGTTCATGGCAGCCAACTTCGCAATCCTCGAAGCTGCATTTGAGAACAAAACGGAGCTGAAGAGGTTCTGCGTAGTTGATTTCGATATAGGCCACGGRAAACAGTACGYGAGCCTTCTACTCGCGCTCTCYGCGCGTGGRAGAACCCCRCCGGCYATGGTAAGGATCGTGGYGGTGGCGGACACCGGCGGCCAAGAAGAGAGATTAAAATCTGTGGGCGAAATGCTAGCAAGACAGGCAGAGAGGTTTAGGATCGGATTCGAGTTCAAAATCATTCAGGTCACTCAGCGATTCTCCGAGTTGACCCGCGAATTGCTTGGATGCGATGCGGATGAGTTTCTAGCTGTGAACTTCGCTTTCAAATTTAACTGA 507 0.4951 MDCMISALKSRVNLLENSPPVAEFFSNEHAESTQLMFENSLCFMVGFMAANFAILEAAFENKTELKRFCVVDFDIGHGKQYXSLLLALSARGRTPPAMVRIVXVADTGGQEERLKSVGEMLARQAERFRIGFEFKIIQVTQRFSELTRELLGCDADEFLAVNFAFKFN* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4079 168 Pfam GRAS domain family 4 166 IPR005202 -
Amo05g4079 168 PANTHER SCARECROW-LIKE PROTEIN 8 1 167 IPR030013 -
Amo05g4079 168 ProSiteProfiles GRAS family profile. 1 168 IPR005202 -
Amo05g4079 168 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 167 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4079 Amo-Chr5 108997163 108998167 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4079 1 167 GRAS Transcription Factor Family AT5G52510 44.444 1.09e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Amo05g4079 GRAS 3.1e-29 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4079 - - aip:107644872 312.383