Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4077 ATGGGGTTCATCTCTATACTCTGCCCCTGCATGGAGACTCGTCTCAGGGGATCCGCCGCACCCTCCCACGATCCCGGCGACGGAGACGCTGCAGACACCTTCGATCTCTTCTTCGGCCTCCACACACTTCAGCTCGCCACGAATTTCTTCTCTGAGCTCAACCAGCTTGGTCATGGAGGCTTTGGCCCTGTTTACAAGGGGTTGATGCCTAATGGCCAAGTAGTAGCTGTTAAGAAGCTTTCATTAGAATCAAGACAAGGTGTCAAAGAATTTACCAACGAAGTCAAGCTGTTACTAAAAATTCAGCACAAAAACTTGGTTACTCTGCTTGGCTGCTGTATAGAAGGACCTGAAAAGATGCTTGTTTACGAGTATCTGCCCAACAAAAGTCTTGATCACTTTCTGTTTGATAAAACAAAGTCTTCATATCTGGACTGGACAACACGGTTTAGAATAGTTACAGGAGTGGCGAGAGGACTTCTCTACCTGCACGAGGAGGCTCCGGAAAGAATAATTCACAGAGACATTAAAGCTAGCAACATATTACTTGACGAGAGGTTAAATCCAAAAATATCAGACTTTGGTTTGGCGAGGCTCTTTCCTGGAGACGATACTCACGTCCAGACATTCAGGATTTCTGGTACACATGGTTACATGGCTCCTGAATATGCATTGCGTGGATATCTATCCGTGAAGACAGATGTTTTCAGTTTTGGGATCTTGGTGTTGGAAATAGTTAGCGGGAGGAAAAATCACGACGTGCAATTTGGTGTAGAAAAGGCTGATCTCTTGAATTATGCATGGATACTTCATCAGGGAGGAAAAGTTATGGATTTAATTGACCAAACTCTTGGTAGATACAACCCTGATGAGGCAGCAATGTGCATTCAGCTTGGATTGTTGTGCTGTCAAGCAAGTATAGTAGATAGGCCTGACATGAATTCTGTTCATCTCATGCTCTCAAGTGATTCTTTTACATTGCCAAGGCCAGGTAGACCCGGAATCCATGGCCGTGTCGGACATTGGACCACAACCACCACCTCTGCTTTTACCAATACTAATGCTAGTAGTGGAACCAAGGCTTCAGGAGGTAGTAGGGTTTCAGGAGCTAGTAGCTATGTGGAGGATTTTTCTAGGAATTCTATCTCCACTTCTTCTTTTGATGAAGGCAGATGA 1176 0.449 MGFISILCPCMETRLRGSAAPSHDPGDGDAADTFDLFFGLHTLQLATNFFSELNQLGHGGFGPVYKGLMPNGQVVAVKKLSLESRQGVKEFTNEVKLLLKIQHKNLVTLLGCCIEGPEKMLVYEYLPNKSLDHFLFDKTKSSYLDWTTRFRIVTGVARGLLYLHEEAPERIIHRDIKASNILLDERLNPKISDFGLARLFPGDDTHVQTFRISGTHGYMAPEYALRGYLSVKTDVFSFGILVLEIVSGRKNHDVQFGVEKADLLNYAWILHQGGKVMDLIDQTLGRYNPDEAAMCIQLGLLCCQASIVDRPDMNSVHLMLSSDSFTLPRPGRPGIHGRVGHWTTTTTSAFTNTNASSGTKASGGSRVSGASSYVEDFSRNSISTSSFDEGR* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4077 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Amo05g4077 391 Gene3D Transferase(Phosphotransferase) domain 1 126 326 - -
Amo05g4077 391 MobiDBLite consensus disorder prediction 347 371 - -
Amo05g4077 391 Gene3D Phosphorylase Kinase; domain 1 28 125 - -
Amo05g4077 391 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 3 389 - -
Amo05g4077 391 SUPERFAMILY Protein kinase-like (PK-like) 36 320 IPR011009 -
Amo05g4077 391 SMART serkin_6 50 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4077 391 CDD STKc_IRAK 56 320 - -
Amo05g4077 391 Pfam Protein tyrosine and serine/threonine kinase 53 317 IPR001245 GO:0004672|GO:0006468
Amo05g4077 391 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 389 - -
Amo05g4077 391 ProSiteProfiles Protein kinase domain profile. 50 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4077 Amo-Chr5 108969358 108972620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4077 12 378 Receptor kinase-like Gene Family AT4G21410 47.978 1.02e-108 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo05g4077 PK_Tyr_Ser-Thr 1.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4077 - - aprc:113868075 638.262