Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4048 ATGGCTGTTGTAACAGAACAAGATATGAAATGGAGAAGAGAGAGGAACAAGTTGAGGCAGCAGCAAGTCCCTTCCATGACCCAAACCACAAGCTGCAAATCCACCATATCTTCTCTCATCCTCTCCTCTTTCTCCAATGAAACCGCCACAAACAAGAACAAGAGTACATTCAGGGGACTTGGTTGCACTGCTGCTTCTGCATCATCACAAGTAGTCTCAGTTCCTGCTGTGATTCGATCCTCTGCTGATTGGAAGAACACTAGGAAGAACAACAAGTGCAGAAGGAGGAACACTGAAAAAAGCAGCATAACATGTCACCATAAACATGCTTCTTCTTCTTCTTCTTTTCAGGATGTATGGTGTGGCCCTGGAATTGGATTTGCATCAGATCATGCTTCTGCTTCTGTGGATTGTGTGGTGGCAAGGAAGAATGCTTCTTCAAGAAGGAACCTTGATGCTGTTGAGAGAGCAACACATAGGGAAGAGCGTCCTCCGCCTTATTTGGGAAGACGCACCATGAACACAGGCTTCTCTTTCTTGGATGATGATCAAGGCATTTTCGTGACACGCCCTGGATCGGAGTCTTTCGCTGCCGGTAGATACTATCGCCACGTTCCGCATCCCTCCTCTGATGGTCTTGCTGAGATAATGATACTTCAAGGAAGACTATTAATGGGTGGAAGATTAAATTCACATGACCAATTTAGAGACTGGAGACTTGATGTTGATAATATGTCATATGAGCAATTGCTTGAGTTGGGTGAGAGAATTGGCCATGTGAACACTGGACTTAAAGAAGATGAGATGGGACACAACATAAGGAAGATTAAGCATGTAATTTCAAATAATCATTCAAAGCATCAAATAGACAAAAAGTGCAGCATTTGTCAGGAGGAGTATGAAGCTGATGATGAAATTGGGAGGCTAACTTGTGAACACAAGTATCACTTTCAGTGTATAAAACAATGGCTTGTCCATAAGAACTTCTGTCCAGTTTGTAAGCAAGAAGTTGTAGTTCGACACTGA 1026 0.4308 MAVVTEQDMKWRRERNKLRQQQVPSMTQTTSCKSTISSLILSSFSNETATNKNKSTFRGLGCTAASASSQVVSVPAVIRSSADWKNTRKNNKCRRRNTEKSSITCHHKHASSSSSFQDVWCGPGIGFASDHASASVDCVVARKNASSRRNLDAVERATHREERPPPYLGRRTMNTGFSFLDDDQGIFVTRPGSESFAAGRYYRHVPHPSSDGLAEIMILQGRLLMGGRLNSHDQFRDWRLDVDNMSYEQLLELGERIGHVNTGLKEDEMGHNIRKIKHVISNNHSKHQIDKKCSICQEEYEADDEIGRLTCEHKYHFQCIKQWLVHKNFCPVCKQEVVVRH* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4048 341 CDD RING-H2_PA-TM-RING 293 334 - -
Amo05g4048 341 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 5 341 IPR045191 GO:0061630
Amo05g4048 341 SMART ring_2 293 333 IPR001841 -
Amo05g4048 341 SUPERFAMILY RING/U-box 292 339 - -
Amo05g4048 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 340 IPR013083 -
Amo05g4048 341 ProSiteProfiles Zinc finger RING-type profile. 293 334 IPR001841 -
Amo05g4048 341 Pfam Ring finger domain 292 334 IPR001841 -
Amo05g4048 341 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 5 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4048 Amo-Chr5 108335465 108349997 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4048 7 248 C3H Transcription Factor Family AT1G73760 37.687 1.80e-39 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4048 - - ahf:112751066 548.51