Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4030 ATGGTTGCAATATCAGTGGAACCATTGAACGTGCAAAACTGGATTCTTCCAGAGATGCCTGGGCTTATAACTGATTTTTTGATATCGCTCGACAACCGGTTTCTGTACTTTGTGAATTGGCTTCATGGTGATATAAGGCAGTATAATATTGAGGGCCCCAAAAATCCTGTACTCAAAGGTCAAGTATGGGTAGGGGGACTTTTTTGGAATGGAAGTTCCATAGTCGCAATAGCAGAAGATGGTAACACTTGGCAATCTGAAGTTCCAGAAGTTCAGCATCTTCATGCCTCTTTTGAAGAAGAAACTAGATTTTTTCAGTATGCACTGGCAATAACATCAAATGACATTGAGGAAATTCAGAATTTTCTAGACAAAGCTGTTGGGTCAAGCTGTGAGGGATTAATCATTAAAACTTCAGATGAAGATTCTACATATGAACCTTCCAATTGGTCAAACAATTGGCTAAAACTGAAGAAAGATTATCTGGATAAACTTACACTGGAAATATATTGA 513 0.3801 MVAISVEPLNVQNWILPEMPGLITDFLISLDNRFLYFVNWLHGDIRQYNIEGPKNPVLKGQVWVGGLFWNGSSIVAIAEDGNTWQSEVPEVQHLHASFEEETRFFQYALAITSNDIEEIQNFLDKAVGSSCEGLIIKTSDEDSTYEPSNWSNNWLKLKKDYLDKLTLEIY* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4030 170 Pfam 56kDa selenium binding protein (SBP56) 3 72 IPR008826 GO:0008430
Amo05g4030 170 PANTHER METHANETHIOL OXIDASE 2 92 IPR008826 GO:0008430
Amo05g4030 170 SUPERFAMILY 3-carboxy-cis,cis-mucoante lactonizing enzyme 5 79 - -
Amo05g4030 170 Gene3D - 85 165 - -
Amo05g4030 170 PANTHER SELENIUM-BINDING PROTEIN 1 2 92 - -
Amo05g4030 170 ProSiteProfiles ATP-dependent DNA ligase family profile. 92 170 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Amo05g4030 170 Pfam ATP dependent DNA ligase domain 92 158 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Amo05g4030 170 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 92 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4030 Amo-Chr5 107949526 107953217 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4030 92 165 Core DNA Replication Machinery Family AT1G08130 63.514 3.19e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4030 K17285 - ahf:112716277 343.199