Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4022 ATGGCAACATCAGCATCCGCATATGAGAATGATATCAAGAACCTTAAGGCAACAGAACTCACATTGGGTTTGCCAGGGACTCATCTTCAACAGAATGTTCCTATTATTGATCAAGAAAAATCATCAGCATCATCTTCATCAAACAAGAGGCCATTGCAATTGTCTCATGAAGAAACTTCTCCTGCTCAGGACTGTGGATCTAAATGCTCTAATATTGCTAAGAACACTGATGATGATGCTGCACCCCCTCCTTCCAAGGCAAAGATAGTGGGGTGGCCACCAATTAGATCATACAGGAAGAACAGCCTTCAGGAACAATCTGAGGCTGCAGGTGGGATCTATGTGAAGGTGAGCATGGATGGAGCACCTTACCTCAGAAAGATTGATTTGAAGATCTATGGAGGCTATCCACAACTCCTCAAAGCCCTTGAAAACATGTTCAAGTTGACTATAGGTGAGTACTCTGAGAAGGAAGGGTATAAGGGATCTGATTATCCACCAAAATATGAAGACAAGGATGGTGACTGGATGCTAGTTGGAGATGTTCCTTGGGACATWTTTGTGACTTCGTGTAAGAGGCTAAGAATCATGAAAGGATCTGAAGCCAGAGGTTTGGGTTGTGCTGTATGA 630 0.4317 MATSASAYENDIKNLKATELTLGLPGTHLQQNVPIIDQEKSSASSSSNKRPLQLSHEETSPAQDCGSKCSNIAKNTDDDAAPPPSKAKIVGWPPIRSYRKNSLQEQSEAAGGIYVKVSMDGAPYLRKIDLKIYGGYPQLLKALENMFKLTIGEYSEKEGYKGSDYPPKYEDKDGDWMLVGDVPWDIFVTSCKRLRIMKGSEARGLGCAV* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4022 209 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 14 206 IPR003311 GO:0005634|GO:0006355
Amo05g4022 209 ProSiteProfiles PB1 domain profile. 112 199 IPR000270 GO:0005515
Amo05g4022 209 SUPERFAMILY CAD & PB1 domains 108 198 - -
Amo05g4022 209 Gene3D - 107 209 - -
Amo05g4022 209 MobiDBLite consensus disorder prediction 24 74 - -
Amo05g4022 209 Pfam AUX/IAA family 18 206 IPR033389 -
Amo05g4022 209 PANTHER AUXIN-INDUCED PROTEIN 14 206 - -
Amo05g4022 209 MobiDBLite consensus disorder prediction 23 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4022 Amo-Chr5 107877992 107879539 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4022 101 205 B3 DNA Binding Superfamily AT2G46530 34.906 1.06e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Amo05g4022 AUX_IAA 1.4e-54 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4022 K14484 - gmx:100527777 264.233