Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4019 ATGTTGAAACTTGCATTGTTCTTCCTCTTAGTTCTGTTCCCATTGTTGTTCCATAGTTCCTTAGGCAACAACATCATCAACACCACTTCATCTTCAACACTTTGTGGCACAAAATCTTGCCCCAATGGACCTAACATAAGTTACCCTTTTTGGCTCTCACATGGTTCTCCCCCTCAAGAATATTGTGGCTACCCAGAATTCGGTTTAATATGCTTAGACGATGGCAACACCATTTTCTCTCCACCACCAGGTTTATACTATTATGTTAAGCACATAGACTATGATAACCATAGCATTAAGCTTATTGATTTCGACACCACAAACCAAACATGTCCAAGGGCACTTCATGGTTTTCCAATAGGGAACTTACCTCTTTCTCATTCTTCATTGAACTTGAACCTTAGCTTTTACTATAACTGTTCTACTTCTACTACTTCACACCCTTCTAATGTTCCTGATATAAGTTGTTTGAGGCAAGGGTCAAAAGAGTCTTTTGTGTTCTTGAAGGGGAATGAGAGCAAGGGTTTTGATTGGTCAGAGAGGTGTGAGGAGAATGTTGATGTGACAGTGATGAAGGATGAAATTAGTAGTAATGGTGGTGAATATGGTTTGGTGAGTGAGTTTGGTAGGGCTATGAATGAAGGGTTTGTGCTTGAATGGGAAACTGAACAGACTTGCAAAGAGTGTGAGGCTTCTGAGGGATATTGTGGATACAGTAGTACTAACAAACAGATCTTGTGTTTCTGCAAGGATGGTACTGTGAGGACCGACAATTGTCGAGGGGAAAGCAAGAGCAGGTTGTCGAAATTAATTATAGGTTTAATAGCTGCAGGAATTGGAGTATTACCTATAACATGCATCATACTTTACATTTTTAGACACAAACTATCACCAATCATGCCAGAAATTTTGAAGATCAGCAATAACGACCAAGATATTGAGGCCTTCATGAAGACTCATGGACCCATATCCATAAAAAGATACACTTATTCAGATATCAAGAAGATGACCAATTCTTTCGAGTCGAAACTCGGGGAAGGTGGTTATGGAGAAGTATATAAAGGATTCCTTAACAATGGTGGTCCTGTGGCTGTAAAGCTTCTCAAAGCTTCCAAAGGGAATGGTGAGGAGTTCATCAATGAGGTCATGAGTATTAGTAAAACATCTCATGTAAACATTGTTGCATTGCTCGGATTTTGTCTCAAAGGTAACAAGAAAAAAGCTCTTGTCTATGAATACATGCCAAATGGATCGCTTGAAAAGTATATACATAACAATGATCCTGTAACCAATCCACCTTTGAGTTGGGAAAGGCTACACCGGATTGCAAAAGGGATAGCTCGAGGGCTAGAATACTTGCACCGAGGTTGCAACACGAGGATTCTCCATTTCGACATAAAACCAAACAACATCCTCCTAGACAAGAACTTTAACCCTAAAATCTCGGATTTCGGGTTGGCTAAGCTCTGCTCAAAGACACATAGCATTGTCACAATGTTGGATGCTAGAGGGACAATAGGGTACATAGCTCCAGAAGTATGGAACAGACATTTTGGTGGAGTATCGCATAAATCTGATGTATATAGTTACGGAATGATGATTCTAGAAATGGTTGGAGGGAAGCATAATAACACAAATGCTGAGGTAACTAGTCATTCTAGTGAGTTGTATTTTCCACATTGGATATACAAGCATATTGAAAGTGACAAGAGTAGTGTGGCATGGCAAGGTGCTACTATGAGCAATGAGGAAGGTAAGATAGTGAGAAAAATGATCATTGTAGGGTTGTGGTGCATTCAAACAATTCCATCAGAAAGACCTCCAATGAGTAGAGTCATTGAAATGCTTGAAGGAAGCATTGATTTGTTGCAAAGTCCACCTAAGCCTTTCAACTTTTCCCCAACTCAAACCAAAGCGGAATATTGTGCAACTTCTAGCACCGATGATTCATTTTCCCCTACTGATTAA 1968 0.3984 MLKLALFFLLVLFPLLFHSSLGNNIINTTSSSTLCGTKSCPNGPNISYPFWLSHGSPPQEYCGYPEFGLICLDDGNTIFSPPPGLYYYVKHIDYDNHSIKLIDFDTTNQTCPRALHGFPIGNLPLSHSSLNLNLSFYYNCSTSTTSHPSNVPDISCLRQGSKESFVFLKGNESKGFDWSERCEENVDVTVMKDEISSNGGEYGLVSEFGRAMNEGFVLEWETEQTCKECEASEGYCGYSSTNKQILCFCKDGTVRTDNCRGESKSRLSKLIIGLIAAGIGVLPITCIILYIFRHKLSPIMPEILKISNNDQDIEAFMKTHGPISIKRYTYSDIKKMTNSFESKLGEGGYGEVYKGFLNNGGPVAVKLLKASKGNGEEFINEVMSISKTSHVNIVALLGFCLKGNKKKALVYEYMPNGSLEKYIHNNDPVTNPPLSWERLHRIAKGIARGLEYLHRGCNTRILHFDIKPNNILLDKNFNPKISDFGLAKLCSKTHSIVTMLDARGTIGYIAPEVWNRHFGGVSHKSDVYSYGMMILEMVGGKHNNTNAEVTSHSSELYFPHWIYKHIESDKSSVAWQGATMSNEEGKIVRKMIIVGLWCIQTIPSERPPMSRVIEMLEGSIDLLQSPPKPFNFSPTQTKAEYCATSSTDDSFSPTD* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4019 655 SMART serkin_6 338 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4019 655 SUPERFAMILY Protein kinase-like (PK-like) 318 617 IPR011009 -
Amo05g4019 655 Gene3D Phosphorylase Kinase; domain 1 310 413 - -
Amo05g4019 655 Pfam Protein kinase domain 341 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4019 655 Pfam Wall-associated receptor kinase galacturonan-binding 35 103 IPR025287 GO:0030247
Amo05g4019 655 PANTHER - 27 647 - -
Amo05g4019 655 ProSiteProfiles Protein kinase domain profile. 338 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g4019 655 Gene3D Transferase(Phosphotransferase) domain 1 414 625 - -
Amo05g4019 655 MobiDBLite consensus disorder prediction 627 655 - -
Amo05g4019 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Amo05g4019 655 CDD STKc_IRAK 344 618 - -
Amo05g4019 655 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Amo05g4019 655 Pfam Wall-associated receptor kinase C-terminal 160 252 IPR032872 -
Amo05g4019 655 PANTHER RUST RESISTANCE KINASE LR10-RELATED 27 647 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4019 Amo-Chr5 107864547 107867528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4019 37 629 Receptor kinase-like Gene Family AT5G38260 40.887 4.91e-144 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo05g4019 Pkinase 1.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4019 - - ahf:112802243 1261.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g4019 05 107864547 107867528 Amo13g2524 13 45480065 45483695 PCT