Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4008 AGGGTTTACAATCTGAGCTGCGTGAACACTCTTACTCTTTGTAGCGGATCTATCAGGAGGAGCTTCTACCCTCTAAGAGTTGCGAAGATGTACACTTTCAGGAAGAAGATCCACAAAGATAAGGATGCTGAGCCAACTGAATTCGAAGAGTCTATTGGACAGGCTTTGTTTGATCTTGAAAATACCAATACGGAGCTGAAAAGCGAACTGAAAGATTTATACATAAATTCAGCTGTTCAAGTTGATGTGTCTGGGGGTCGAAAGGCTGTAGTTATCCATGTTCCCTTTAGATTAAGGAAAGGTTTCCGGAAGATTCATGTAAGACTTGTTAGAGAGCTTGAGAAGAAGTTCAGTGGCAAGGATGTAGTGTTGATTGCCAACCGTAGGATAGTGAGGCCGCCAAAGAAAGGATCTGCAGTTCAGCGCCCTCGCAACCGTACACTCACTGCTGTGCATGAGGCAATGCTTGAGGATATTGTATTGCCTGCTGAGATCGTTGGGAAGCGTGTTAGGTATCGTCTTGATGGGTCGACAATCATGAAGGTTTTCTTGGATCCCAAGGAACGAAACAACACTGAGTACAAGTTGGAGGCTTTTGCTGCAGTATACAGGAAACTTTCAGGCAAAGATGTGGTGTTTGATTACCCTGCACAAGAGGCTTAG 663 0.4449 RVYNLSCVNTLTLCSGSIRRSFYPLRVAKMYTFRKKIHKDKDAEPTEFEESIGQALFDLENTNTELKSELKDLYINSAVQVDVSGGRKAVVIHVPFRLRKGFRKIHVRLVRELEKKFSGKDVVLIANRRIVRPPKKGSAVQRPRNRTLTAVHEAMLEDIVLPAEIVGKRVRYRLDGSTIMKVFLDPKERNNTEYKLEAFAAVYRKLSGKDVVFDYPAQEA* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4008 220 Coils Coil 56 76 - -
Amo05g4008 220 Pfam Ribosomal protein S7e 36 215 IPR000554 GO:0003735|GO:0005840|GO:0006412
Amo05g4008 220 PANTHER 40S RIBOSOMAL PROTEIN S7 19 219 IPR000554 GO:0003735|GO:0005840|GO:0006412
Amo05g4008 220 ProSitePatterns Ribosomal protein S7e signature. 108 121 IPR000554 GO:0003735|GO:0005840|GO:0006412
Amo05g4008 220 PANTHER 40S RIBOSOMAL PROTEIN S7 19 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4008 Amo-Chr5 107682307 107684786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4008 30 220 Cytoplasmic Ribosomal Protein Gene Family AT1G48830 76.963 1.22e-111 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4008 K02993 - gmx:100527642 348.591