Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4007 ATGTCTTTTTCTTCAAAGAGCAATAATAAAAACATTATTAGCTGCTCTAGTGAAGATGATAATAATAATAAGGATAATGAACTTAGAAGAGGACCTTGGACCCATGAAGAGGATGATCTTCTCAAAATGTGCATTGCCATTCATGGTGAAGGAAGATGGAATTTTCTGGCCAAATCTTCAGGGTTAAAAAGAACAGGGAAGAGTTGCAGATTAAGGTGGCTTAATTATCTAAAGCCAGATGTGAAAAGAGGAAATTTAACCCCACAAGAAAAGCTTTTGATTTTTGAACTCCACTCAAAGTGGGGCAACAGGTGGTCAAAAATTGCACAACAATTGCCTGGAAGGACAGATAATGAAATCAAGAACTTCTGGAGAACAAGGATCCAAAAACAAGTGAAGTATTTTAAGATTGACACATTATGGAGGACAAGATTTGTTGATGAATCAAAAGAATCATACCAAGAGCAAAACCAAAACCAAGCATTAATTATTCCAACAATGTCTCTTGATTGTGTCACTCAAATGCAGCAATATCCATCACTTATTGAAGAAGCAACACCAACACCAGCAAAAACTCAAATAATTCCATGTGAGAGACCTTCTTGTATGATGAATGGTGCAAGTTCAAATTGTGTGGATTACTCAGATTATGAAAACAACAACAATAATGGATCATCATGCATGTCCTTCACAGAGTCAACAAATATGGCAAACATGGTTCAGTTTGAGGCTTTAGATAACATCACTAATGCGTATGGCATGGATGCACTCAACATCGATATGGAATGCCAAGTGTCACAAAACAATTGGCTAGACAAGGATTTTGTATGTACCATGTGGAACATGAACATGCATGGATGA 861 0.3659 MSFSSKSNNKNIISCSSEDDNNNKDNELRRGPWTHEEDDLLKMCIAIHGEGRWNFLAKSSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEKLLIFELHSKWGNRWSKIAQQLPGRTDNEIKNFWRTRIQKQVKYFKIDTLWRTRFVDESKESYQEQNQNQALIIPTMSLDCVTQMQQYPSLIEEATPTPAKTQIIPCERPSCMMNGASSNCVDYSDYENNNNNGSSCMSFTESTNMANMVQFEALDNITNAYGMDALNIDMECQVSQNNWLDKDFVCTMWNMNMHG* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4007 286 Pfam Myb-like DNA-binding domain 30 77 IPR001005 -
Amo05g4007 286 Pfam Myb-like DNA-binding domain 83 126 IPR001005 -
Amo05g4007 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 132 IPR017930 -
Amo05g4007 286 CDD SANT 32 77 IPR001005 -
Amo05g4007 286 ProSiteProfiles Myb-like domain profile. 25 77 IPR001005 -
Amo05g4007 286 SUPERFAMILY Homeodomain-like 28 124 IPR009057 -
Amo05g4007 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 81 IPR017930 -
Amo05g4007 286 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 22 282 IPR044676 GO:0003700|GO:0006355|GO:0043565
Amo05g4007 286 PANTHER MYB DOMAIN PROTEIN 116 22 282 - -
Amo05g4007 286 MobiDBLite consensus disorder prediction 1 19 - -
Amo05g4007 286 Gene3D - 86 129 - -
Amo05g4007 286 MobiDBLite consensus disorder prediction 1 31 - -
Amo05g4007 286 SMART sant 82 130 IPR001005 -
Amo05g4007 286 SMART sant 29 79 IPR001005 -
Amo05g4007 286 ProSiteProfiles Myb-like domain profile. 78 128 IPR001005 -
Amo05g4007 286 Gene3D - 21 83 - -
Amo05g4007 286 CDD SANT 87 126 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4007 Amo-Chr5 107668245 107670225 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4007 25 283 MYB Transcription Factor Family AT1G68320 41.993 2.70e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo05g4007 Myb_DNA-binding 3.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4007 K09422 - gmx:778042 249.595