Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g4004 ATGATGGCTCATCACCAATTCACAGAAGATTTTCAAAGCATGATCATGAAACCTTTCTTGGATATTGATCCAAGCATGGATCTTATCAACCAGTTCATAGGTTTGAACACAACAACAACAACAACAACACATATGAACATGTGTGACAACTTGTTTGGATCTCATCATCATCATCATCATCATCAAGATGATTTTCCAGGAAACTTGGAAGAAAGTTTCCATCAAAATCATCATCATGTCAACAACAACAATGCATCATCAGTAGTAGTCCCAGTAATTTCCTCTTCCCTTCTCAATTATTATCCATCAGAAAATGAAGAAATCCATGAAGGTAAAAAGAGAAAAGCAACTACTTCAGGAAACTCAACTCCTGCAGCTTCTCATCATAGTGAAAGCAAGATTATTAAAAATAATGGTTGTGGTGGAAGAGGTAAGAGAGTGAAGAGCAATAAAACAGAAGAAGAAGAGGAGAAGAAACAAAAGGAAGTGGTTCATGTCAGAGCAAGAAGAGGTCAAGCCACTGATAGTCACAGCATAGCTGAAAGGGTTAGAAGAGGAAAAATCAATGAAAAATTAAGGTGCCTGCAAAACATTGTTCCAGGATGTTACAAGACCATGGGCATGGCGGTTATGTTGGATGAAATCATAAACTATGTTCAATCCTTGCAACATCAAGTAGAGTTCCTTTCTTTGAAGCTCACAGCAGCAAGTACCTTTTATGACTTCAATTCAGAGACAGATGCTTTGGAAACAATGCAGAGAGCAAGGGCATCCGAGGCAAAAGAGTTAGGCAAGTATGGGAAAGAAGGGCATGGAGGAGTTTCTTGCTATCAACCAAATTGGCCTCTTGTTTGA 855 0.386 MMAHHQFTEDFQSMIMKPFLDIDPSMDLINQFIGLNTTTTTTTHMNMCDNLFGSHHHHHHHQDDFPGNLEESFHQNHHHVNNNNASSVVVPVISSSLLNYYPSENEEIHEGKKRKATTSGNSTPAASHHSESKIIKNNGCGGRGKRVKSNKTEEEEEKKQKEVVHVRARRGQATDSHSIAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTFYDFNSETDALETMQRARASEAKELGKYGKEGHGGVSCYQPNWPLV* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g4004 284 Pfam Helix-loop-helix DNA-binding domain 176 223 IPR011598 GO:0046983
Amo05g4004 284 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 238 IPR036638 GO:0046983
Amo05g4004 284 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 6 282 IPR024097 GO:0006355
Amo05g4004 284 CDD bHLH_AtBPE_like 163 247 - -
Amo05g4004 284 Gene3D - 168 239 IPR036638 GO:0046983
Amo05g4004 284 MobiDBLite consensus disorder prediction 146 177 - -
Amo05g4004 284 MobiDBLite consensus disorder prediction 117 134 - -
Amo05g4004 284 PANTHER TRANSCRIPTION FACTOR BEE 1 6 282 - -
Amo05g4004 284 MobiDBLite consensus disorder prediction 106 177 - -
Amo05g4004 284 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 222 IPR011598 GO:0046983
Amo05g4004 284 SMART finulus 178 228 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g4004 Amo-Chr5 107606638 107608678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g4004 7 283 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 46.959 1.93e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo05g4004 HLH 0.00011 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g4004 - - adu:107490384 522.702