Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3996 ATGGAAGAGAATCTACCTCCTGGATTCAGATTCCACCCAACAGATGAAGAGCTTATAACATATTATCTTACAAGAAAAGTCTCTGAAAATGGATTCACTTCTAAAGCTATTGCTGTTGTTGATCTTAACAAGTCTGAGCCTTGGGACCTTCCAGGTAAGGCAAGCATGGGTGAGAAGGAATGGTACTTCTTCAGTTTAAGAGATAGAAAGTATCCAACAGGACTAAGAACAAATAGGGCAACAGAATCAGGGTATTGGAAGACCACAGGCAAAGACAAAGAGATATTTCGTGGTGGGGTTTTGGTTGGAATGAAGAAAACCCTAGTCTTTTATAAGGGTAGGGCTCCAAGGGGTGAGAAAAGTAATTGGGTCATGCATGAATATAGACTTGAGAACAAGAATCCCTTTAGAACTAAGGATGAATGGGTAGTGTGCAGGGTATTCCAAAAGAGCATAGCAGCGAAAAAACCGCCGCAACAAACATCATCCTCCCAACCTGAATCCCCATGTGATGACACAACCTCTTTGGTCAATGAATTTGGTGATGTTATTGAGCTTCCAAATCTAAACACCAACATTAATAATAATAATAATTCTTCATCATCATCCTCAAGTGCTTTATTCCCTAACAACATTCTTATTTCAGGACAACACATTCATCATCACCATGACCTAACCAATAATAATAACAATAATAATGTTAACACAAACATGAACTTAGCAATGAATTGGCCACCATCAAGTGATCATAATATTAATAATGTTCCATGGCCTTCAGTAGGGTTGTTGAATCCAAGTATTTCATCAATGAATTCCTTGATTCTCAAGGCATTGCAGCTTAGGAATAATTATCAACAAAGAGAAGTTGCATCCACATTTGCACCATCATCATATATTATGCCTCATCATCAAGGACTAGTAGTTCCTCATCAACAAGTTATTGGAACCAATAATAATGATGACCTAATAACAACTTCTTCAAATCTCATCAATGCTTCTTCTTCTTCATCAAAAGTTTTGGAATGTATGCCACATCAGCAACAACAACAACAACAACAGGAGCAACCATTCAATTTGGACTCCCTTTGGTAA 1092 0.3764 MEENLPPGFRFHPTDEELITYYLTRKVSENGFTSKAIAVVDLNKSEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATESGYWKTTGKDKEIFRGGVLVGMKKTLVFYKGRAPRGEKSNWVMHEYRLENKNPFRTKDEWVVCRVFQKSIAAKKPPQQTSSSQPESPCDDTTSLVNEFGDVIELPNLNTNINNNNNSSSSSSSALFPNNILISGQHIHHHHDLTNNNNNNNVNTNMNLAMNWPPSSDHNINNVPWPSVGLLNPSISSMNSLILKALQLRNNYQQREVASTFAPSSYIMPHHQGLVVPHQQVIGTNNNDDLITTSSNLINASSSSSKVLECMPHQQQQQQQQEQPFNLDSLW* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3996 363 Gene3D NAC domain 14 153 IPR036093 GO:0003677|GO:0006355
Amo05g3996 363 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Amo05g3996 363 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 285 - -
Amo05g3996 363 MobiDBLite consensus disorder prediction 154 174 - -
Amo05g3996 363 PANTHER BNACNNG63190D PROTEIN 2 285 - -
Amo05g3996 363 SUPERFAMILY NAC domain 3 150 IPR036093 GO:0003677|GO:0006355
Amo05g3996 363 ProSiteProfiles NAC domain profile. 5 150 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3996 Amo-Chr5 107462873 107466175 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3996 1 363 NAC Transcription Factor Family AT3G18400 54.424 4.68e-123 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo05g3996 NAM 7.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3996 - - aip:107644305 636.336