Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3990 ATGAAGCCCCAATCTGAAAACCACTCTACAGAACCCAGGAATCTGGGCCACTCTTCAAGTGCCAACTTCAATGGAATCAATTTTGGTGAAGTTGAAGCCAAGCACCGAATGCTTTTGGTCCAGTGGCTAAATAGTCTTCTTCCAACGTTGAACTTGCCGGTAAATATCACAGATGATGAGCTAAGAGTATGCTTGAACAATGGTACAATTTTATGTCAAATAATGAACAAGCTACGACCTGGTTCAGTAAGTGAGGTCAGTGAATTTGATAATTCTCCGTCAGCAAAGTCAGAGAATGTTAAGAGATTCCTGAAAGCCATAGATGCATTGGGCATGCCCAAGTTTGAAATATCAGACCTAGAGAAGGGCCATATGAAGTCTGTTGTGGATTGTCTTTTAACACTTAGAGCCAAAAGTTTACAGAATGCTTGGGGAGACAATATTTCTATGACTAATTCCAAAGTCAGATCCATCATGAGTTCACCTTCATCACATGGGGGTGATCAGAGGAAGAATCCATCAGAGTCAAAGTTCCAAAGTGTTTTGCGTAGTCCGGTAATGGCTGAGCCATCGGCTGCATTATTACACCATGTAGGTCATAAATTTCATGAGGTGTTTCAAATGAAACACGGAAGCTATGCTGAACTTCCTGCTGCAAAAATCTCAGAACTGATGAAATCTACCAGTTTAAATAATGCTCCTACTCAATCACTTTTGAGTGTTGTGAACGCCATTTTGGAAGAAAGTGTTGAAAGAAGAAATAGTGAAATACCCCATCGTGTGGCTGTCTTGTTGAGAAAAGTTGTCCAGGAGATTGAGCGGCGCATATCGACTCAAGCAGATCATTTAAAAACACAAAACAATCTTTTTAAGGCTCGCGAAGAAAAGTATCAATCAAGAATTAGAGTACTTGAGGTTCTTGCTTCTGGAGCAAGGGAAGACAATGAGGTTGGGGTTCGAAGCCCTATTCGGCAACAGCAACAGACTGCAGTTACAAGTGCAATCGTGCAGTCAAAGGAACAGAGTGAGGTGACTAAAATGGAAGAAAAGAAGGCTTTTGAATCAATACAGTCTGAAAAGGCTAAAGAGGAGACAAAGACGGAAGATAACCAAGAGGTAATTCGGTTGATGAAAGAGCTGGAAAATAAAAACATGGACATTTCAAAATTGAAGCAAGAGCTCGAAATAATGAAGAAAGGTAGCCAAGATGTTACTAGCTCTGTGAAAGAGATGGAAGATAAAAACATGGAAATTTCGACATTGAAGAAAGAGCTAGAAACAATGAAGAAAGGCAACCAAGACCTTACTAAGGTTGTGGAAGAGATGGAAAATAAAAGGTTGGAATTTTCGGCTTTGAAACAAGAAGTAGGAATAATAAAGAGTGATGACGAGGATGTTGCTAGGTTGACAAAAGATCTGGAAAGCAAAAAAATAGAAATTGCAACGATGAAGCAAGAACTAGAAGCATTGAGAAAAGGAAATCAAGATGTTGCTGGGCTGATGAAAGATTTGGAAAATAAAAGCACAGAAATTTCAACATTGAAGCAAGAAATAGAAACATTGAAAAAAGGTAACCAAGATGTTGCTAGGCTGATGAATGATCTAGAAAATAAAAAAGCAGAAATTTCAACAAAGAAGCAAGAACTAGAAAACACAATGAAAAATGGTAACCAAGATATTGCTAGGCTGATGAAGGATCTGGAAAATAAAAGCCTGGAGATTTCAGCATTGAAGCAAGAAATAGAAACACTGAAAAAAGATAACCAAGATGTTGCTAGGATGATGAAGGATCTGGAAAATAAAAGCATGGAGATTTCAACATTAAAGCAAGAAATAGAAACATTGAAAAAAGATAACCAAGATGTTAGTAGGCTGATGAAGGATCTAGAAAATAAAAACACTGAAATTTCAACAAGGAAGCAAGAACTAGAAGACACATTGAAAAATGGTAACCAAGATATTGCTAAGCTGATGACAGATCTGGAAAATAAAAGAACAGAAATTTCGGCATCGAAGCAAGAAATAGAAACATTGAAAAAAGATAATCAAGATGTTACTAAGCTTGTGAAGGACCTAGAAAATAAAAATTCAGAACTTTCAACAAAGAAACGAGAATTAGAAGAAACGCTGAAAAATGGTAACCAAGATATTGCTAAGCTGAAGAAAGATCTTGAGAATAAAACCATGGAAATTTCAGCATTGAAACAAGAAATAGAAACATTGAAAAAAGATAATCAAGATGTTACTAAACAGGTGAATGATCTAGAAAAGAAAAATGCAGAACTTTCAACAAAGAAGCAAGAATTAGAAGAGGCATTGAAAAATAGTAACCAAGATATTGCTAGGCTGACGAAAGATCTAGAAACAACAAAGAAAACATATGATTTACAGTGCTCACAGTTGGAAGCAGAAATCAAGGGTGCTAAAGGAGAACTGAAAGAGAAGTCACAAGAATATGAGCATCAGTTGGAATCATTAAGTAATAAGATTAGAGAGAATGAGGCCTCTTATGAGTCCGAATATCAAAAGTGGAACCTAAAAGTTATCCAATTTCAGAAAGCTACAACTTTTCAGCTTAGTTCGATCAAGGTCTTGAAATTGTCTTGGGAAACTGTTAAGCAGCATGTGCTAAATGAGCAACCATTTTATGCAGAAGAGTTTAAGCGATTAGGTGTAAATCTTAAACCATTGGTAGATGCAGCTGAGAACTATCAGGTAGTTCTTGCGGAAAATCGGAAGATGTTCAATGACATTCAAGAATTAAAAGGAAATATTAGAGTGTATTGCAGAGTTAGACCATTTCTCCCAGGACAAAAGGAGAAACAATCTATTGTGGAACACTATGGTGAAACCGAGTTGGTTGTGGCAAATCCTTCCAAACAAGGGAAAGAAGCCCTTAGAACATTTAAGTTTAACAAGGTCTTTGGTCCAACTGCAACTCAAGTTGATGTATACAATGACATTCAAGCCTTTATAAGATCAGTACTCGACGGGTACAACGTATGCATATTTGCTTATGGCCAAACTGGTTCTGGGAAAACTTACACAATGAGTGGTCCAAATGGTGCAACAGCTGAGAGTGTTGGTGTTAACTATCGAGCTTTGAATGACCTTTTCAGCATAGCGACTACCAGACAGAGCACCATTTCCTATGAAATTGGGGTTCAAGTGATTGAAATATACAATGAACAAGTGCGAGATCTGTTGACGTCTGAATCTACTCCAAAAAAGGTTGGGATATTGACTCACTCCCAACCAAATGGCTTAGCAGTACCTGATGCTAGCATGCAACTTGTAAAATCAACCGCGGATGTCATAAAGCTGATGGACATTGGCCTGAAAAATAGAGCCAAAAGTGCAACTTCTATGAACGAAAGAAGTAGCCGTTCTCACAGTGTGGTATCGATTAATGTTCGTGGAGTAGACATGAAGTCTGGTTCTACTCTTCAAGGCAACCTTCATTTGGTTGATTTGGCTGGAAGTGAGAGGGTAGATCGGTCTGAAGTGACTGGTGATCGACTTAAGGAAGCACAGCATATCAACAAATCACTATCTGCTCTTGGAGATGTCATCTTTGCTCTTGCTCAAAAGAATGCTCATGTGCCATACAGAAATAGCAAGCTTACTCAACTTCTGCAATCTTCCCTTGGTGGTCATGCAAAGACACTCATGTTGGTACAAATCAATTCAGATGTAAAGTCATATTCGGAATCTCTAAGTACCTTGAAGTTTGCTGAGAGAGTTTCTGGTATTGAGTTAGGAGCTGCAAAAAGTACCAAAGATGGGAAAGATGTCAGAGAATTAATGGAGCAGGTGGCTTCTCTAAGGGACACTATTTTGTCAAAAGATGAGGAGATTGAGAGGCTGCAATTACTTAAAGATCTGAAATCTGACAAGCCTACCCCAGAATAG 3912 0.3814 MKPQSENHSTEPRNLGHSSSANFNGINFGEVEAKHRMLLVQWLNSLLPTLNLPVNITDDELRVCLNNGTILCQIMNKLRPGSVSEVSEFDNSPSAKSENVKRFLKAIDALGMPKFEISDLEKGHMKSVVDCLLTLRAKSLQNAWGDNISMTNSKVRSIMSSPSSHGGDQRKNPSESKFQSVLRSPVMAEPSAALLHHVGHKFHEVFQMKHGSYAELPAAKISELMKSTSLNNAPTQSLLSVVNAILEESVERRNSEIPHRVAVLLRKVVQEIERRISTQADHLKTQNNLFKAREEKYQSRIRVLEVLASGAREDNEVGVRSPIRQQQQTAVTSAIVQSKEQSEVTKMEEKKAFESIQSEKAKEETKTEDNQEVIRLMKELENKNMDISKLKQELEIMKKGSQDVTSSVKEMEDKNMEISTLKKELETMKKGNQDLTKVVEEMENKRLEFSALKQEVGIIKSDDEDVARLTKDLESKKIEIATMKQELEALRKGNQDVAGLMKDLENKSTEISTLKQEIETLKKGNQDVARLMNDLENKKAEISTKKQELENTMKNGNQDIARLMKDLENKSLEISALKQEIETLKKDNQDVARMMKDLENKSMEISTLKQEIETLKKDNQDVSRLMKDLENKNTEISTRKQELEDTLKNGNQDIAKLMTDLENKRTEISASKQEIETLKKDNQDVTKLVKDLENKNSELSTKKRELEETLKNGNQDIAKLKKDLENKTMEISALKQEIETLKKDNQDVTKQVNDLEKKNAELSTKKQELEEALKNSNQDIARLTKDLETTKKTYDLQCSQLEAEIKGAKGELKEKSQEYEHQLESLSNKIRENEASYESEYQKWNLKVIQFQKATTFQLSSIKVLKLSWETVKQHVLNEQPFYAEEFKRLGVNLKPLVDAAENYQVVLAENRKMFNDIQELKGNIRVYCRVRPFLPGQKEKQSIVEHYGETELVVANPSKQGKEALRTFKFNKVFGPTATQVDVYNDIQAFIRSVLDGYNVCIFAYGQTGSGKTYTMSGPNGATAESVGVNYRALNDLFSIATTRQSTISYEIGVQVIEIYNEQVRDLLTSESTPKKVGILTHSQPNGLAVPDASMQLVKSTADVIKLMDIGLKNRAKSATSMNERSSRSHSVVSINVRGVDMKSGSTLQGNLHLVDLAGSERVDRSEVTGDRLKEAQHINKSLSALGDVIFALAQKNAHVPYRNSKLTQLLQSSLGGHAKTLMLVQINSDVKSYSESLSTLKFAERVSGIELGAAKSTKDGKDVRELMEQVASLRDTILSKDEEIERLQLLKDLKSDKPTPE* 1304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3990 1303 SMART ch_5 35 138 IPR001715 GO:0005515
Amo05g3990 1303 PANTHER KINESIN-LIKE PROTEIN KLP-3 3 565 - -
Amo05g3990 1303 Gene3D - 28 140 IPR036872 -
Amo05g3990 1303 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 924 1289 IPR027417 -
Amo05g3990 1303 SMART kinesin_4 922 1259 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Amo05g3990 1303 PANTHER KINESIN MOTOR CATALYTIC DOMAIN PROTEIN 3 565 - -
Amo05g3990 1303 PANTHER KINESIN MOTOR CATALYTIC DOMAIN PROTEIN 770 1293 - -
Amo05g3990 1303 Gene3D - 589 619 - -
Amo05g3990 1303 Gene3D - 554 588 - -
Amo05g3990 1303 Gene3D - 493 526 - -
Amo05g3990 1303 Gene3D - 369 401 - -
Amo05g3990 1303 Gene3D - 620 650 - -
Amo05g3990 1303 Gene3D - 402 433 - -
Amo05g3990 1303 Gene3D - 652 841 - -
Amo05g3990 1303 Coils Coil 1265 1285 - -
Amo05g3990 1303 Pfam Calponin homology (CH) domain 36 136 IPR001715 GO:0005515
Amo05g3990 1303 CDD CH 39 140 IPR001715 GO:0005515
Amo05g3990 1303 PANTHER KINESIN-LIKE PROTEIN KLP-3 770 1293 - -
Amo05g3990 1303 MobiDBLite consensus disorder prediction 155 181 - -
Amo05g3990 1303 Coils Coil 466 836 - -
Amo05g3990 1303 PRINTS Kinesin heavy chain signature 998 1019 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Amo05g3990 1303 PRINTS Kinesin heavy chain signature 1121 1138 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Amo05g3990 1303 PRINTS Kinesin heavy chain signature 1152 1170 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Amo05g3990 1303 PRINTS Kinesin heavy chain signature 1201 1222 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Amo05g3990 1303 Gene3D Kinesin motor domain 868 1253 IPR036961 -
Amo05g3990 1303 Pfam Kinesin motor domain 930 1250 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Amo05g3990 1303 ProSiteProfiles Calponin homology (CH) domain profile. 33 140 IPR001715 GO:0005515
Amo05g3990 1303 ProSiteProfiles Kinesin motor domain profile. 924 1251 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Amo05g3990 1303 Coils Coil 363 400 - -
Amo05g3990 1303 Coils Coil 408 455 - -
Amo05g3990 1303 MobiDBLite consensus disorder prediction 155 182 - -
Amo05g3990 1303 SUPERFAMILY Calponin-homology domain, CH-domain 34 136 IPR036872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3990 Amo-Chr5 107271425 107279380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3990 912 1251 Calmodulin-binding Proteins AT5G65930 39.535 1.60e-67 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3990 K10406 - ini:109159585 1078.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2477 13 44613259 44618175 Amo05g3990 05 107271425 107279380 PCT
Amo03g1049 03 22901235 22905937 Amo05g3990 05 107271425 107279380 PCT
Amo05g3990 05 107271425 107279380 Amo13g2477 13 44613259 44618175 PCT
Amo05g3990 05 107271425 107279380 Amo03g1049 03 22901235 22905937 PCT