Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3988 ATGCGATTAAGCTGCAACGGTTGTCGTGTCCTTCGCAAGGGTTGCAACCTTGAATGCCCCATTAAACCCTGCCTCAATTGGATCAAATCGCCCGAATCACAGTCCAACGCCACCCTCTTCCTCGCCAAGTTCTACGGCCGCGCTGGCCTCCTCAACCTCCTCACCGCCGGCGACCCCAAGATCCGCCCAGCTATTTTTAAATCTTTGCTATACGAAGCTTGCGGCCGGATAGTGAACCCGGTTTTCGGTTCGACCGGGTTGCTATCGACTGGGAGCTGGCACTTGTGCGAAGCAGCTGTTGAAGCCGTTCTTAGCGGCGCGCCGATTAGACAACAGGATGCTTCAGATGGCGGTGACCAGCTGCTAAACCCGTCTGATATTCGCCACGTGGTGAAGAGGGGGAAATCTTGCAGCTCCGATAATGTCCTTAAGCCCCGGAAGAGCCAGTTCAAGAGGCGCGCTGAGAAGTCGAAGCCGGAGCCGGAGGTTAAGCTGGATCAGGGTGTAGCCGAGTTGGTGGTGGAGGCTTGCGTAGTGAATGAGTTAGATGACTCGGCGAGCCCTGACTCAGGGTCTGGGCTGAGTGAGCACGTAAGTGTTGTTGTTGGCGGCGGTGCAGAAGCTGATAGCGGCTCAATTGAGAGTGTCAATCCGGCTCGAGCCGATGATGGGGAGCTTGAGCTGGAGCTGACTTTGGGGTGTCAGTGGCTTTGA 714 0.563 MRLSCNGCRVLRKGCNLECPIKPCLNWIKSPESQSNATLFLAKFYGRAGLLNLLTAGDPKIRPAIFKSLLYEACGRIVNPVFGSTGLLSTGSWHLCEAAVEAVLSGAPIRQQDASDGGDQLLNPSDIRHVVKRGKSCSSDNVLKPRKSQFKRRAEKSKPEPEVKLDQGVAELVVEACVVNELDDSASPDSGSGLSEHVSVVVGGGAEADSGSIESVNPARADDGELELELTLGCQWL* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3988 237 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Amo05g3988 237 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Amo05g3988 237 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 234 - -
Amo05g3988 237 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3988 Amo-Chr5 107204664 107205480 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3988 1 232 AS2 family AT3G02550 45.798 2.41e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo05g3988 LOB 1.4e-21 No_clan