Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3986 ATGCTATTTTTGTGTCAAAAATGCAACCTTTACCTTCTTCCATTCTCCTCTGTACCATTCAAATCAAAGTCCATCTGCAACCAAACTTCAACTTCCACCATTCTCAACTGCCATAACCCACATTCCCAAGATGCCCCAGATGAACATCATCASAGCCCCGTTCACCGRAAACACAATTCCAAATCCACAAACTTTRTCCTTCAGAACCTTTCCCAGAACAACCAGAATCAGCAGCAACTCACTGCTCCCCAAAAGATTGAACTTGAAGAACACCCCATCATGCCCCACCAAGAAAAGGTGAAACTTTTGGAACTTTCCCTTGTTAGGAAGAGGACCCCTCAGTTCCCTGGTTCCATCTATGTTCAGTCCCCAAGTGACTCTGATGTGGGTTCTTCTCTTCCACCTATAAGAAACCTTTTTCAATCAAGTGTTGACAATGATGGTGATGGTGGTGGTGGTGGTGGTGATGGCCATGTTGATGAAGAAGAGGAGGAGATGATAATGCGTGCAGTTGAGATTCGTAGGAAGGTGACTTTGGAGATTTTCAAAGAAGCCATGATGAAGGAGGGRAGGTTTGGAATCACTTACACTACTAACTTGGCTAATAGGCTGCAAGGTTTCCTTGACTATGTTATGATTGAAGCTGCTAGCTTGAAGAGGATGCCAGAATATTKTAACTCTAGTTTCAATTTGCGCMCCAAAYCCGTCATTGAGGACTCCCAGGTTGTGCCACTTATCAGATGGTTGAAGCATAATGAACTATCATATCCRCAGATATCAAAGCTCATTTTGTTGTCAAGAGGAAGAATTGATTTGATAAGGGACCGTGTCCAGTGGTTGAAGTCGAATCATGTGAAAGGGGAGTTCCTTGGGGTTGCACTTGTTAAGGGTGGTGAGAATATTTTGCACCGCAGCTATAAGGAACTTGACGAGATTGTAGAGTATCTGGTGTCCAATGGAGTTAGGAGAGACTGGGTGGGTTATGTCATTAGTCGATGTCCTCAATTGTTGTCGTACAGCTTAGAAGAAGTGAAGACTCGTGTGGCGTTCTATGTCGARATGGGTATGAATGAGAAGGATTTTGGCACAATGGTTTTTGATTTCCCCAGAGCACTTGGTRACTTAACTATGGAAGAAATGAACCAAAAGGTTAATTACTTGAAAGAATTTGGGCTTAAAAATGAGGATGTTGGCAAGTTGCTAGCATTTAGGCCACAATTGATGGGTTGTAGCATTGAAGAACAATGGAAACCTCTTGTTAAGTATTTCTACTATTATGGAATCACTAAAGATGGCATGAGGAGAATGCTTACCCTTAAACCAATGGTCTTTTGTACCGATTTGAAGTTGAATATTGTTCCAAAGGTAAAATTTTTTCAGGACATAGGGGTTAGAGATGATGCAYTTGGCAACATGCTTGTGAAGTTTCCTACTCTACTCACTTACAGCCTCAACAAGAAGATTAGGCCAGTGGTTATATTCTTGATGACCAAAGCTGGAGTAACTGAGAAAGATATTGCCAAGGTTGTAGCTCTGGGACCTGAGCTCTTGGGATGCAGCATTGTACAAAAGCTTGAAGTAAATGTTAAATATTTTTTGTCTCTTGGCATACARGTCCGGCAGCTAGGRGAGATGGTTGCRGATTTCCCATTGCTGCTCAGATACAATCCCGATGTCCTTCGGCCTAAGTATGTTTATCTGCGGCGAACCATGATCCGACCTTTGCAAGATATCATCGAGTTTCCAAGGTTTTTCAGCTATTCTCTTGAAGGGCGAATTATCCCAAGACACAAGGTTCTTGTGGAGAATCAGCTTAATATTAAGCTGAGATACATGCTGGCTAGCAGTGACGTACAATTCAATAAACTGGTCAATGATCTCATCAGAAAGCGCAAAAAATTTCAGTCTGGTGTTGCCGGCGATGAGGAGGAAGAGACTCAATCCAGCGAAGAGGAGGAAGAGACTCAATCCGAGGCTGTTATTCCAGTGGATACTACTACTAAACTCCAAACATAA 2016 0.4211 MLFLCQKCNLYLLPFSSVPFKSKSICNQTSTSTILNCHNPHSQDAPDEHHXSPVHRKHNSKSTNFXLQNLSQNNQNQQQLTAPQKIELEEHPIMPHQEKVKLLELSLVRKRTPQFPGSIYVQSPSDSDVGSSLPPIRNLFQSSVDNDGDGGGGGGDGHVDEEEEEMIMRAVEIRRKVTLEIFKEAMMKEGRFGITYTTNLANRLQGFLDYVMIEAASLKRMPEYXNSSFNLRXKXVIEDSQVVPLIRWLKHNELSYPQISKLILLSRGRIDLIRDRVQWLKSNHVKGEFLGVALVKGGENILHRSYKELDEIVEYLVSNGVRRDWVGYVISRCPQLLSYSLEEVKTRVAFYVEMGMNEKDFGTMVFDFPRALGXLTMEEMNQKVNYLKEFGLKNEDVGKLLAFRPQLMGCSIEEQWKPLVKYFYYYGITKDGMRRMLTLKPMVFCTDLKLNIVPKVKFFQDIGVRDDAXGNMLVKFPTLLTYSLNKKIRPVVIFLMTKAGVTEKDIAKVVALGPELLGCSIVQKLEVNVKYFLSLGIQVRQLGEMVADFPLLLRYNPDVLRPKYVYLRRTMIRPLQDIIEFPRFFSYSLEGRIIPRHKVLVENQLNIKLRYMLASSDVQFNKLVNDLIRKRKKFQSGVAGDEEEETQSSEEEEETQSEAVIPVDTTTKLQT* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3986 671 MobiDBLite consensus disorder prediction 118 145 - -
Amo05g3986 671 MobiDBLite consensus disorder prediction 118 162 - -
Amo05g3986 671 MobiDBLite consensus disorder prediction 58 84 - -
Amo05g3986 671 MobiDBLite consensus disorder prediction 643 658 - -
Amo05g3986 671 Pfam mTERF 354 620 IPR003690 GO:0003690|GO:0006355
Amo05g3986 671 Pfam mTERF 273 353 IPR003690 GO:0003690|GO:0006355
Amo05g3986 671 PANTHER CGI-12 PROTEIN-RELATED 77 645 IPR003690 GO:0003690|GO:0006355
Amo05g3986 671 MobiDBLite consensus disorder prediction 38 84 - -
Amo05g3986 671 MobiDBLite consensus disorder prediction 638 671 - -
Amo05g3986 671 SMART mt_12 575 606 IPR003690 GO:0003690|GO:0006355
Amo05g3986 671 SMART mt_12 507 538 IPR003690 GO:0003690|GO:0006355
Amo05g3986 671 SMART mt_12 543 573 IPR003690 GO:0003690|GO:0006355
Amo05g3986 671 SMART mt_12 470 502 IPR003690 GO:0003690|GO:0006355
Amo05g3986 671 SMART mt_12 292 322 IPR003690 GO:0003690|GO:0006355
Amo05g3986 671 SMART mt_12 398 429 IPR003690 GO:0003690|GO:0006355
Amo05g3986 671 SMART mt_12 434 465 IPR003690 GO:0003690|GO:0006355
Amo05g3986 671 SMART mt_12 327 357 IPR003690 GO:0003690|GO:0006355
Amo05g3986 671 SMART mt_12 362 393 IPR003690 GO:0003690|GO:0006355
Amo05g3986 671 Gene3D Transcription termination factor 3, mitochondrial 404 627 IPR038538 -
Amo05g3986 671 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF2, CHLOROPLASTIC 77 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3986 Amo-Chr5 107177181 107180344 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Amo05g3986 mTERF 1.4e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3986 K15032 - zju:107426883 811.216