Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3982 ATGGCGGTTTCCGGTAACTCCTCCGGCGAACCTCTACCTGAATTGAACACAACATCATCGGTTCTAGGCGTGAAGCTCGTGGTTCTAGTTGCAATTATCTTCATTGCGATCGTGGTAACGATCTTGCTCATCTTCTTCRTCTGCTTCAGAAGAAGCAGAACCTCCTCTTGCAGAAACCACAGAACCCTCGGGAAACATAGCTCAGGAACAATCCCTCTGGTTTCAAAGGAGATCAACGTCGTCAAATCCCTAGATCTCGAACAACAACAGCAACAGCAACAGATTCTCGAAGACGTTGTTGTTGTTGATGATGATCTAAAGAAGAAGAAGAAGGAGGAGGAGGAAGGTGAAGGCACCAAGAATAAAAAGAGTGAGGGAGAAGGGAGTGATGACGTGTCAATTTCCGGTGGGAGAAGGAGTGAGGCGTCGTCGATGTCGGTGGAGGATCCGAACATCGGGTGGGGGAGGTGGTATAGTCTGAAGGAGGTGGAGGTGGCGACACGTGGCTTCGCGSAGGAGAATGTCATTGGTGAAGGTGGCTATGGGATTGTATACAGAGGAGTTCTGCAAGATGGTTCTGTTGTTGCCGTCAAGAATCTTCTCAACAACAAGGGTCAAGCGGAGAAGGAGTTTAAGGTGGAGGTTGAAGCCATTGGAAAAGTAAGGCATAAGAATTTGGTTGGGCTGGTAGGATATTGTGCAGAAGGTCCTAAAAGGATGCTTGTTTATGAATATGTTAACAATGGAAATTTGGAGCAGTGGCTGCATGGTGATGTAGGACCAGTTAGCCCCTTGACATGGGATATTCGGATGAAGATTGCCATTGGCACTGCTAAAGGGCTAGCTTACTTGCATGAAGGCTTAGAACCCAAAGTTGTGCACCGAGATATAAAATCCAGTAACATTCTTTTGGACAAAAARTGGAATGCCAAAGTATCCGATTTTGGACTTGCCAAGCTCTTAGGATCCGAGAAAACCCACGTGACTACGCGTGTAATGGGAACATTTGGATATGTGTCACCTGAATATGCAAGCACCGGTATGCTTAATGAGCGCAGTGATGTGTATAGCTTCGGAGTTCTTCTCATGGAGATAATTACAGGAAGATCCCCCATTGATTATTCTAGACCTCCTGGAGAGATGAATTTGGTTGATTGGTTCAAGGGAATGGTAGCAAATCGTCGTGGTGAAGAGTTAGTCGATCCTTTAATCGAGGTTCAGCCCTCTCAAAGATCCCTGAAGCGAATGTTACTCATTTGTCTTCGCTGTATTGATTTGGATGTTGTTAAGCGACCAAAGATGGGTCAAATTGTTCATATGCTTGAGGCAGATGATTTTCCATTTCGTTCTGAAATTCGTACACTTAAAGAGAAAGACAATGTCCCTTCTTCTGCAGATGTTTCGAGTAAAAGAGTGCCATATGAATCAAAATATGCAGAGTCCATAGGAAAATCAAGATGGAAATAA 1467 0.4472 MAVSGNSSGEPLPELNTTSSVLGVKLVVLVAIIFIAIVVTILLIFFXCFRRSRTSSCRNHRTLGKHSSGTIPLVSKEINVVKSLDLEQQQQQQQILEDVVVVDDDLKKKKKEEEEGEGTKNKKSEGEGSDDVSISGGRRSEASSMSVEDPNIGWGRWYSLKEVEVATRGFAXENVIGEGGYGIVYRGVLQDGSVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVGLVGYCAEGPKRMLVYEYVNNGNLEQWLHGDVGPVSPLTWDIRMKIAIGTAKGLAYLHEGLEPKVVHRDIKSSNILLDKKWNAKVSDFGLAKLLGSEKTHVTTRVMGTFGYVSPEYASTGMLNERSDVYSFGVLLMEIITGRSPIDYSRPPGEMNLVDWFKGMVANRRGEELVDPLIEVQPSQRSLKRMLLICLRCIDLDVVKRPKMGQIVHMLEADDFPFRSEIRTLKEKDNVPSSADVSSKRVPYESKYAESIGKSRWK* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3982 488 CDD STKc_IRAK 176 442 - -
Amo05g3982 488 Gene3D Transferase(Phosphotransferase) domain 1 246 454 - -
Amo05g3982 488 MobiDBLite consensus disorder prediction 110 146 - -
Amo05g3982 488 SMART serkin_6 170 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g3982 488 PANTHER RECEPTOR-LIKE KINASE 18 487 - -
Amo05g3982 488 Pfam Protein tyrosine and serine/threonine kinase 173 441 IPR001245 GO:0004672|GO:0006468
Amo05g3982 488 Gene3D Phosphorylase Kinase; domain 1 137 245 - -
Amo05g3982 488 MobiDBLite consensus disorder prediction 110 134 - -
Amo05g3982 488 ProSitePatterns Protein kinases ATP-binding region signature. 176 198 IPR017441 GO:0005524
Amo05g3982 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 292 304 IPR008271 GO:0004672|GO:0006468
Amo05g3982 488 ProSiteProfiles Protein kinase domain profile. 170 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g3982 488 SUPERFAMILY Protein kinase-like (PK-like) 145 442 IPR011009 -
Amo05g3982 488 PANTHER OS01G0323000 PROTEIN 18 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3982 Amo-Chr5 107137758 107147761 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3982 118 444 Trihelix Transcription Factor Family AT1G70460 47.289 8.39e-95 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Amo05g3982 PK_Tyr_Ser-Thr 2.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3982 - - lang:109351508 697.197