Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3974 ATGTATGCAAAATGTGGTTCTGTGAGAGTCGCTCGTGCCTTGTTCGAGATGCTTAGGGAGGAAATAGTTGTGTCTTGGAATGCAATTATCACTGGTTATGCAATGCATGGTCTTGCCAAGGAAGCCTTGGAACTCTTTGAGGTAATGAGGACAGAGGCTCGGCCGGATCTTATAACCTTTGTTGGTGTTCTAGCAGCTTGCAGCCGTGGGCTTCTGCTCAATGAAGGGCACGCATTTTATGATATGATGATGAGAGATTATGGTATCAATCCAACTGTTCAACATTACACATGCATGGAAGTTATGGGTCAAGAATTTTCTCATGAAGGGGTTAATAGCGAGCATACATCATATGATCAGTATGAGCAGGAGGAAGAAAAATATGAGGAAGTTGACGTGGATTATATGGATGAGGACGACACAAGTGTGGAACTAATGTTCGATTATCACGGCTTCGATGAAGGGTATAACATTGACTCACTTGAAGACATTGGGATGATTGAATTTTGGAACATCAGGGATGAAGATGTATGTCATTTTCACTTTTCTGATGTCGACATTGCATTTGAGTTCTACAATAGATATGCAAGGACAAGAGGCTTTAGTGCTCGGAAGAACAGGAGTAGGAAGAGTCGTGCGGGCGCACTTAAGTTGAAGAATTTTGTATGTCATCGTGAAGGATTTAGACTACAAAATAGTTACTGCATTGGAAACCTTAAGAGAAAACCTACACCCGAGACAAGGTGGAAAGAGGTCCAGGCTGACCTCGCCTCTGTGAATGGGAGACCCAGTTTGCAAACCTGTTTTCAACAGTTAGAGAGGAGTGCTGCCAATGTTTACACCCTATCAATATTTCATATGTTCCAACCAATCCTTGTACGGGCTGCATCAATGAAGGTAATAAATATGAGGCAAACTGGCTCTTATGTGATTTACTCTGTCGCTTTAGACCGAACGCCAAATGAGACGTGGCGTGTATTCTGTTGTGACATTGAGATGGAATTCAATTGTTCATGTATGAGAATGGAATCATTTGGCATACCTTGTGAACACATAATTTGTGTCTTGGTGCATGAAGATATAGAGGAGTTGCCAAGGTCATTAGTCTTGCCTCGGTGGACCAAGACTGCCAAAGTTAGTTTCCAAAATGCTCGAGGGCTTCATTGGGATTCTTTGATGCTAAGTCAATACGGTTGTTTGATGGATTGGTTTAGACAACTAGCTAACTTTGCTTGTCGAGATAACGAGAGATTTATCTTTATACGGGAAATGGCTATGAATTTGTTGAAACAATTTAAGGAGGAAGATGCTGCACAAAAAGAGTTGGTCAATGATGCAGATAGTGTAAGAGATGGTGTGCAAGTGGATAATTCTGGAGCTGGGCTCGCAACCAATGATCTCGGACATAGCATGCCAAGGGACCCAAGAAAATGTAGGACAAAAGGGGGGGCTTCACAGTTCAATAAAAGAAAACATCGATGTGGACAKTGTGGCATGGAGGGCCACAATCGAACAACTTGTCGTGTTCGTCGTGGCATCTCACAGTCAGAAGGCTGGGGAAATGACTCGGATGATCACATGAACATTGAAGATGACTCATTGGTATATGATGAGAATGCTTCGTACAGTAGCAACGAAGTGATGTTCTTCTTAGAGGCCATAAGAATGGACGAGAGGCTGTCAAGTACTTTGGACCAGCACCTGGTGTGCCCCATAGTCACACCAAGCCCTATGTTCGTTCAAAAGGATGGAAATTTGCGCGTGCTAGAGGAAGAAGGACTAGCAAAGGCTTCAGAGTTTTAG 1803 0.4304 MYAKCGSVRVARALFEMLREEIVVSWNAIITGYAMHGLAKEALELFEVMRTEARPDLITFVGVLAACSRGLLLNEGHAFYDMMMRDYGINPTVQHYTCMEVMGQEFSHEGVNSEHTSYDQYEQEEEKYEEVDVDYMDEDDTSVELMFDYHGFDEGYNIDSLEDIGMIEFWNIRDEDVCHFHFSDVDIAFEFYNRYARTRGFSARKNRSRKSRAGALKLKNFVCHREGFRLQNSYCIGNLKRKPTPETRWKEVQADLASVNGRPSLQTCFQQLERSAANVYTLSIFHMFQPILVRAASMKVINMRQTGSYVIYSVALDRTPNETWRVFCCDIEMEFNCSCMRMESFGIPCEHIICVLVHEDIEELPRSLVLPRWTKTAKVSFQNARGLHWDSLMLSQYGCLMDWFRQLANFACRDNERFIFIREMAMNLLKQFKEEDAAQKELVNDADSVRDGVQVDNSGAGLATNDLGHSMPRDPRKCRTKGGASQFNKRKHRCGXCGMEGHNRTTCRVRRGISQSEGWGNDSDDHMNIEDDSLVYDENASYSSNEVMFFLEAIRMDERLSSTLDQHLVCPIVTPSPMFVQKDGNLRVLEEEGLAKASEF* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3974 600 Pfam FAR1 DNA-binding domain 190 235 IPR004330 -
Amo05g3974 600 SMART 26again6 335 362 IPR006564 GO:0008270
Amo05g3974 600 ProSiteProfiles Zinc finger SWIM-type profile. 312 360 IPR007527 GO:0008270
Amo05g3974 600 Gene3D Tetratricopeptide repeat domain 1 100 IPR011990 GO:0005515
Amo05g3974 600 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 103 - -
Amo05g3974 600 TIGRFAM PPR: pentatricopeptide repeat domain 24 51 IPR002885 -
Amo05g3974 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 22 52 IPR002885 -
Amo05g3974 600 PANTHER - 1 103 - -
Amo05g3974 600 Pfam PPR repeat 24 51 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3974 Amo-Chr5 106914898 106919035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3974 1 99 Glycoside Hydrolase AT3G49170 41.000 4.09e-19 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo05g3974 FAR1 4.5e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3974 - - aip:110272016 624.78