Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3960 ATGGAGGATGTGGTGTATAAAATGGTTTTGGGGTGTAACAAAGATGACAAGTTTGATTTGAAGGGACTTATTCATGAAATGTTGATCTTGGCTGGAAAATTTGATGTTACAGATTTTGTGCCTTGGCTTGGACCATTGGATTTACAGGGACTTAGACGAAACTTCAAGAAACTCAGTAAACAAGTTGACGAAGTGCTTGAGAAAATAATCAAGGATCATGAACATGCTTCTTCAAACGCTCACAACAACAATGAGAAACATGGCAACAAGGACTTTGTGGACATATTACTCTCACAGATGCACCGACCAATTGACCCTTACGACGAACAAAATCATGTCATTGATCGCACCAACATAAAGGCTATTGTCTTAGACATGATCGCCGCGGCATTCGACACTTCCGCCACAGTTATTTTGTGGGCTTTATCCGAACTCTTAAGGAATCCAAGGGTGATGAAGAAGCTTCAAGAAGAGCTAAGAAATGTGGTTGGAATGAACAAGCTAGTGGAAGAGGTTGATTTACCAAAGTTGAGTTACTTAGACATGGTGATTAAAGAGGCGCTAAGATTACACCCTGCAGGAACGTTTATTACCCGGAAATCAATGAAAGACATTGTGATTCATAATTATTACATCAAGAAATCTTCAGAGATACTTGTGAATTTATGGGCAATAGGGCGAGATCCTAAGGTATGGTCGAATAATGCGCTTGAGTTTTATCCTGAGAGATTCTTGAATAAGAACGTGGATCTTCGTGGTTATGACTTTGAGTTGATACCATTTGGTTCTGGTCGTAGAGGGTGTCCTGGGATTCAATTGGGTCTTGTTACGGTTAAACTTGTCGTGTCTCAGTTTGTGCATTGCTTTGATTGGGAACTTCCATGGGGTATGAGTCCTAATGAATTAGACATGAGTGAGAAATATGGCATAACAGTCCCAAGAGTCAAGGATTTGCTTGCTGTGCCAGCGTTTCGTCTTCTTAGAATATTGGCACAAGATGAACCAAGTAAATAA 1014 0.4024 MEDVVYKMVLGCNKDDKFDLKGLIHEMLILAGKFDVTDFVPWLGPLDLQGLRRNFKKLSKQVDEVLEKIIKDHEHASSNAHNNNEKHGNKDFVDILLSQMHRPIDPYDEQNHVIDRTNIKAIVLDMIAAAFDTSATVILWALSELLRNPRVMKKLQEELRNVVGMNKLVEEVDLPKLSYLDMVIKEALRLHPAGTFITRKSMKDIVIHNYYIKKSSEILVNLWAIGRDPKVWSNNALEFYPERFLNKNVDLRGYDFELIPFGSGRRGCPGIQLGLVTVKLVVSQFVHCFDWELPWGMSPNELDMSEKYGITVPRVKDLLAVPAFRLLRILAQDEPSK* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3960 337 SUPERFAMILY Cytochrome P450 3 322 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo05g3960 337 Gene3D Cytochrome P450 2 320 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo05g3960 337 Pfam Cytochrome P450 4 314 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo05g3960 337 PANTHER CYTOCHROME P450 FAMILY PROTEIN 1 326 - -
Amo05g3960 337 PRINTS E-class P450 group I signature 118 135 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo05g3960 337 PRINTS E-class P450 group I signature 258 268 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo05g3960 337 PRINTS E-class P450 group I signature 138 164 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo05g3960 337 PRINTS E-class P450 group I signature 268 291 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo05g3960 337 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 261 270 IPR017972 GO:0005506|GO:0016705
Amo05g3960 337 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 1 326 - -
Amo05g3960 337 Coils Coil 48 68 - -
Amo05g3960 337 PRINTS P450 superfamily signature 129 146 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo05g3960 337 PRINTS P450 superfamily signature 268 279 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo05g3960 337 PRINTS P450 superfamily signature 259 268 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo05g3960 337 PRINTS P450 superfamily signature 182 193 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3960 Amo-Chr5 106725682 106729837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3960 3 330 Monolignol Biosynthesis Gene Families AT4G36220 37.982 6.12e-78 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3960 - - gmx:100814172 443.736