Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3944 ATGACAGAAACAAAGTCAACTAGCAAGATTTCCAAGAAACAGGATTCGAAAAAATATTCTGCTCCTAGCAATCAGCTTTCAAGGAAACAACATCGAAAGGGTGAAAACCCTACTCGATTCATTCCAACCTCCGACCCACCTTCTGATTTTGGACATTCTGACTCGTGGATCTGTAAGAATTCGGCTTGTAGAGCAGTTCTGTCTAAAGATGATACATTTTGTAGAAGATGTTCTTGCTGTATTTGCCACCTTTTCGATGATAACAAGGACCCTAGTCTTTGGTTGGTTTGCACATCCGACTCAGCCCAAGGTGATTCCTGTGGTATGTCTTGCCACATCGAGTGTGCTCTTCAGCATGAAAAAGTGGGAGTAGTTGATCATGGGCAACTGATGCAACTAGATGGCAGTTATTGTTGTGCATCCTGCGGCAAAGTTACCGGGATACTTGGATGTTGGAAGAAGCAGCTAAATATAGCAAAAGATGCTCGGCGTTTAGATGTGCTGTGTTACCGGATATATTTGAGCTTCAGGCTTCTGAATGGAAGTTTAAGATTTAAACAACTTCATGAAATTGTACAAGAGGCGAAGGCTAAATTAGAAACGGAAGTTGGTCCAGTTAATGGGGTTTCTTCCAAGATGGCACGTGGCATTGTCAGCAGACTCCCTATTGCCGGTGATGTACAGAAACTCTGCTCTCTTGCTATTGGGAAAGCTGATGAATGGTTGGCCACTGTTCCCAGTTCAAATCCAGAATCCGGAGAGGGCTCCCTTCCCGCGGCCTGCAAGTTTGTTTTCGAAGAGGTAACAGCTTCATCAGTCAAAATAATTTTGATTGGAATATCAAATGCGTCTTCCGAGGAAATTAAGGGTTACAAGCTCTGGTATTACAAGAGTAGGGAGGAATCACACACAAAAGATCCTGTTTGTGTCTTTCCGAAAGCTCAGAGGAGGATTTTGATATCTGATCTCCAGCCATGCACAGAATATACTTTTAGGATTATATCTTATACCGATAAGGGCGATTTAGGTCATTCTGAGGCCAAGTGTTTCACCAAGAGCATAGAGATATTGGAAAAAAGTCCGTCTTCATCGGTTGCCATCGGCCGCAAGAAGGAGAGCCTTCAAACTGGAGACAATTCTTTTGGATCCAAAACGGAGCCGAGTTCTTCAATGGTTGATTCTGGATTTAAAGTTCGAGACCTTGGAAAACTTTTGCATCTTGCCTGGGCTCAAGAACAAGGTTGCTTGGAGGGGTTTTGCGGAGCGGATTTGAGAAATTGCTGTGCACAAAGAGAAATGATTGTGCCTCGCAATCTAGAAGAGCGGTTCCCTTCCGTTTCACGAGGCCTCGATTTAAATGTTGCTTCGGTGCCTGATTTAAATGAAGAACTTACACCTCCTTTCGAGTCTTCCAGGGACGAAGATAATGGTTGCACTTTGCAGCAGGCAGTTGAGCCGGACGACGATGCAGCCTCTCATGATCTCGAAAAAAACTGTTTGGCAGGGTCGGATGGTAGTGGTGATTCCCAAATCTGGACACAAGGGCCGACCGGAGAAGTCCCGGCTGTTGACTCTCGTGTAGATGCATGCAAGAAAAGGTTAGCAAGCTCGAACGAAGAGGCGCATGATTGTGACAGCACTCTGATGAATGGATCTCCTTTGCACATAGCGGATGGTTCGTTCTCATTGGACGAGAACTTCGAATATTGTGTGAAAGTGATTCGTTGGCTAGAATGCCAGGGTCATATTAAACAGGAGTTTCGGTTGAAGTTGCTGACATGGTTCAGTTTGAGGTCGACGGAGCAAGAACGTAGGGTGGTTAACACGTTCATTCAGACTCTGATCGATGATCCGAGTAGTTTGGCCGGGCAACTCGTCGACTCATTCTCCGATATTATATCAATCAAGAGGGCAAGAAATGGGTTGTGTAACAAAGCTGTGGGATCAAATTAA 1953 0.448 MTETKSTSKISKKQDSKKYSAPSNQLSRKQHRKGENPTRFIPTSDPPSDFGHSDSWICKNSACRAVLSKDDTFCRRCSCCICHLFDDNKDPSLWLVCTSDSAQGDSCGMSCHIECALQHEKVGVVDHGQLMQLDGSYCCASCGKVTGILGCWKKQLNIAKDARRLDVLCYRIYLSFRLLNGSLRFKQLHEIVQEAKAKLETEVGPVNGVSSKMARGIVSRLPIAGDVQKLCSLAIGKADEWLATVPSSNPESGEGSLPAACKFVFEEVTASSVKIILIGISNASSEEIKGYKLWYYKSREESHTKDPVCVFPKAQRRILISDLQPCTEYTFRIISYTDKGDLGHSEAKCFTKSIEILEKSPSSSVAIGRKKESLQTGDNSFGSKTEPSSSMVDSGFKVRDLGKLLHLAWAQEQGCLEGFCGADLRNCCAQREMIVPRNLEERFPSVSRGLDLNVASVPDLNEELTPPFESSRDEDNGCTLQQAVEPDDDAASHDLEKNCLAGSDGSGDSQIWTQGPTGEVPAVDSRVDACKKRLASSNEEAHDCDSTLMNGSPLHIADGSFSLDENFEYCVKVIRWLECQGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISIKRARNGLCNKAVGSN* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3944 650 PANTHER VIN3-LIKE PROTEIN 1 4 646 - -
Amo05g3944 650 Gene3D Immunoglobulins 242 354 IPR013783 -
Amo05g3944 650 Pfam Fibronectin type III domain 264 343 IPR003961 GO:0005515
Amo05g3944 650 SUPERFAMILY Fibronectin type III 265 346 IPR036116 GO:0005515
Amo05g3944 650 MobiDBLite consensus disorder prediction 1 16 - -
Amo05g3944 650 ProSiteProfiles Fibronectin type-III domain profile. 257 356 IPR003961 GO:0005515
Amo05g3944 650 MobiDBLite consensus disorder prediction 1 49 - -
Amo05g3944 650 Pfam PHD - plant homeodomain finger protein 58 176 IPR032881 -
Amo05g3944 650 MobiDBLite consensus disorder prediction 497 523 - -
Amo05g3944 650 MobiDBLite consensus disorder prediction 367 389 - -
Amo05g3944 650 PANTHER VIN3-LIKE PROTEIN 2-RELATED 4 646 IPR044514 GO:0010048|GO:0040029
Amo05g3944 650 CDD FN3 262 341 IPR003961 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3944 Amo-Chr5 106468632 106471884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3944 55 642 PHD Gene Family AT3G24440 49.418 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3944 - - gsj:114418583 1110.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2455 13 43555770 43561418 Amo05g3944 05 106468632 106471884 PCT
Amo05g3944 05 106468632 106471884 Amo13g2455 13 43555770 43561418 PCT