Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3942 TTAAACCTAATTCTATCCCACTCTCTCGAGCTCCATTCACACTCCATTCAACTAAAACGAGCTTCTTCCTCTCTCCTTCCACGAGCTTCTTCTTCCGTTGCTGCTGCCGCCGCCGCTTGCGTCGCGTCTCCTCATCGCACAAGTTTCAGTCATATCCAATTCATATCAATTCAACAATGGCCGCTGTGGCTTAACCTTCCTCTAGAAACCAGACGCCGTCCTCCTCGTGCTCCTTTTCCTACCCCTTCGCTTCATACACCTCTGCCAATTTCGCTCCCGGAGCCTCCCCCTCGTCCCCACGCGCTTCTCCTCCTCCTTTGGCCACCATCAGCCTTTTTCTTCCACCTCTTCACCACCATGTCCAACATCGTCATCCGTGAGATTCTTCTCAGAGCAACCACCAGACTCCCCTGGGAAACACTCCACGCCTATGAAGAGGCCCATGGTCTTGCTCCTGAAATACCTGAAGATCTATACCACTTGATCAAGAAGGTTGTCTCAATCAGGAAGCACTTGGAGAGGAATAGGAAGGACAAGGACTCCAAATTTAGGTTGATTTTGGTAGAGAGCAGGATCCACCGCCTTGCACGTTACTACAAGAAGACCAAGAAGCTTCCAGCCGTATGGAAATAG 633 0.5071 LNLILSHSLELHSHSIQLKRASSSLLPRASSSVAAAAAACVASPHRTSFSHIQFISIQQWPLWLNLPLETRRRPPRAPFPTPSLHTPLPISLPEPPPRPHALLLLLWPPSAFFFHLFTTMSNIVIREILLRATTRLPWETLHAYEEAHGLAPEIPEDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPAVWK* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3942 210 SMART Ribosomal_S15_2 141 210 IPR000589 GO:0003735|GO:0005840|GO:0006412
Amo05g3942 210 SUPERFAMILY S15/NS1 RNA-binding domain 144 209 IPR009068 -
Amo05g3942 210 CDD Ribosomal_S15p_S13e 146 210 IPR000589 GO:0003735|GO:0005840|GO:0006412
Amo05g3942 210 Pfam Ribosomal protein S15 153 204 IPR000589 GO:0003735|GO:0005840|GO:0006412
Amo05g3942 210 Gene3D - 152 210 - -
Amo05g3942 210 PANTHER RIBOSOMAL PROTEIN S15P/S13E 146 210 IPR023029 -
Amo05g3942 210 PANTHER 40S RIBOSOMAL PROTEIN S13 146 210 - -
Amo05g3942 210 ProSitePatterns Ribosomal protein S15 signature. 168 198 IPR000589 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3942 Amo-Chr5 106452331 106453287 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3942 146 210 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 93.846 4.10e-38 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3942 K02953 - egr:104453961 129.413