Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3940 ATGGCGAGTAGGCTGAAGGAAGATGAGAAGAACGAGCGCGTAATTCGCGGTCTTCTCAAGCTTGAACCGAATCGAAGATGCATTAACTGCAACAGCTTGGGACCACAATATGTCTGCACAAATTTCTGGACGTTTGTTTGCACAAACTGTAGTGGAATACACCGCGAATTCACCCATAGGGTTAAATCAATTTCAATGGCTAAATTTACTTCACAAGAAGTAAATGCTCTTCAAGGAGGAGGAAATCAGCGTGCAAAAGAAATTTATTTTAAAGAATGGGATGCACAACGTAATTCTTTYCCTGATAGCAGTAATGTTGATCGGCTCCGGGACTTTATTAAGCATGTTTATGTGGATAGAAGATTTACTGKAGAGAGGGCTAACGACAAACCACCAAGAGGAAAGGGTGACAATGATATCTATGAAAACAGGAGAAATGACATGTATCAGGGAGGGTCTAGAAGCCCTCCGTACGAGGACACATATGAACGGCGTTATAGTGACAGGTCTAGTTCAGGTGGAAGAAGTCCTGGATATGATCAAGAAAGTAGGCAATATGGTGACTATGGGAGGAGTCCTGGTCGTCCTCCAATAGTCAATGATTGGCGTCGTGAAGATCGTAGAGTATCTGATGGGGATTATAAGGTAGAAAATCAATCTCCTGATCGAGCCAGAGATGTTGGTTCTTCCAGTCCACCTGTGGTCCGACCTGTCAGAGAGATATTGGGGGAAAACGTAGTACCTCTTCGGATAAATGAACCCCCCAAACCAAACAGTGGTAAAGCTGCAGATGGCTCTGTGTTGACACAGCGAACCGCATCTTCCAGTAGCTTGGCGTCCAGCAATGGGAATCCAGTGGATGTTAAGCTTGAGATTACAAAGAGCCTTATTGATTTCGATGCTGATCCTGAACCACCTGTTGCTCCGGCAATTCCTCCAGCCCAACAAACTAATGTGTCTCAACCTGTTGTGCAGCCAGAAAAATCCAGTGCTGATAATTGGGCCTCTTTTGATGTTGCTTCTCGAGCTACAGCAAATTCAACTCCAAGCCCTGTGAATGTAAATCCACTTGAATCTGTGTTGTCGCAATTGTCAGTGCCAGCTTCTTTACCTGCACATCTTTCTGGAGTCCAAGCTGGCCCAACTGTTGCAACAGCCATTCCTGCGGGCAATGCGACAACACCTGCAAGTGTCGGCGGTTTCTCAGCTTTTCCACTGAGTGGTTCTTCAGGACCATCTCCTGGACTGGCAACAGCACTGCCTCCTAGTAATGCAGGACAGTGGACTGGTCTGCAGCATCAGCAACCATTGTTTCAAGCTAATGCTACCCATTCCACACAACAATATAAACCACCTGTAGGTGGAGCTGTAAACAATCAGCCATGGAATATATCCTCTGTGCCGACAGTTCAAGGGCATCAAAATACACCAATGCCACATGCATACCATGATGCTATAAACCCTGCCAATACAATCAGTGTTGTTTCACAACCTTCCACTGAAGTAAAATCARKTGGAAGAAAAGAACTTCCTGAGGATCTATTCACYGTGAAATACCCATCCTATCCTGCGCCGGTTCCAGGTTGGCAAATGGGTCTTCCCCATGGCATGGGTCTTCCCCGTGGCATGGGTGTCTCAGTGCAATATAATAATGTGGTGCCCATGCCAAATTTTCCGCAGCAATCAAAATCTGTCAATCCATTTGATGCCGGCGGTGAATCTCCCCAAGTTCAAGCACCAACTTTTCCTTCCATGTCATCTTTGCATGGTGCTCTGCCTAGTATGCCACCTTCAGGAGCAATTCATCCTGCAAGCCTGGGTAATCCATCGCACGCCTGGAACCCGCCCCTGTCATCATCATATGTATCTGTCCTTCCTGGACAAGCACAAACTCATCCATCAGCTACGGGAGCAAGGAATTACATTGTACAACAAATGCCACCACCTAACTTGCCAATGCCAAGGCCAGAAGCTAGTAGTTTCGGAACTGGAGGAGCTGTTTTCGGCTTGTCAAATCCAGATCAGCAGCTAACTAATTCATTCTCCACCACTCCTGCCTCTACTCCCTTCCCTGCAGGGGGGAACCCATTCGGCTGA 2097 0.4664 MASRLKEDEKNERVIRGLLKLEPNRRCINCNSLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSISMAKFTSQEVNALQGGGNQRAKEIYFKEWDAQRNSFPDSSNVDRLRDFIKHVYVDRRFTXERANDKPPRGKGDNDIYENRRNDMYQGGSRSPPYEDTYERRYSDRSSSGGRSPGYDQESRQYGDYGRSPGRPPIVNDWRREDRRVSDGDYKVENQSPDRARDVGSSSPPVVRPVREILGENVVPLRINEPPKPNSGKAADGSVLTQRTASSSSLASSNGNPVDVKLEITKSLIDFDADPEPPVAPAIPPAQQTNVSQPVVQPEKSSADNWASFDVASRATANSTPSPVNVNPLESVLSQLSVPASLPAHLSGVQAGPTVATAIPAGNATTPASVGGFSAFPLSGSSGPSPGLATALPPSNAGQWTGLQHQQPLFQANATHSTQQYKPPVGGAVNNQPWNISSVPTVQGHQNTPMPHAYHDAINPANTISVVSQPSTEVKSXGRKELPEDLFTVKYPSYPAPVPGWQMGLPHGMGLPRGMGVSVQYNNVVPMPNFPQQSKSVNPFDAGGESPQVQAPTFPSMSSLHGALPSMPPSGAIHPASLGNPSHAWNPPLSSSYVSVLPGQAQTHPSATGARNYIVQQMPPPNLPMPRPEASSFGTGGAVFGLSNPDQQLTNSFSTTPASTPFPAGGNPFG* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3940 698 MobiDBLite consensus disorder prediction 124 285 - -
Amo05g3940 698 MobiDBLite consensus disorder prediction 198 222 - -
Amo05g3940 698 CDD ArfGap_AGFG 12 122 - -
Amo05g3940 698 MobiDBLite consensus disorder prediction 558 588 - -
Amo05g3940 698 PANTHER ARFGAP/RECO-RELATED 1 698 IPR044820 GO:0005096
Amo05g3940 698 MobiDBLite consensus disorder prediction 263 285 - -
Amo05g3940 698 Gene3D Arf GTPase activating protein 2 131 IPR038508 -
Amo05g3940 698 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Amo05g3940 698 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Amo05g3940 698 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Amo05g3940 698 MobiDBLite consensus disorder prediction 558 698 - -
Amo05g3940 698 MobiDBLite consensus disorder prediction 611 643 - -
Amo05g3940 698 MobiDBLite consensus disorder prediction 299 332 - -
Amo05g3940 698 PANTHER ARF GTPASE ACTIVATOR 1 698 - -
Amo05g3940 698 SUPERFAMILY ArfGap/RecO-like zinc finger 11 124 IPR037278 -
Amo05g3940 698 MobiDBLite consensus disorder prediction 387 476 - -
Amo05g3940 698 MobiDBLite consensus disorder prediction 313 332 - -
Amo05g3940 698 MobiDBLite consensus disorder prediction 387 482 - -
Amo05g3940 698 MobiDBLite consensus disorder prediction 124 144 - -
Amo05g3940 698 Pfam Putative GTPase activating protein for Arf 13 124 IPR001164 GO:0005096
Amo05g3940 698 MobiDBLite consensus disorder prediction 665 690 - -
Amo05g3940 698 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Amo05g3940 698 SMART arf_gap_3 12 130 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3940 Amo-Chr5 106380111 106387367 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3940 12 122 C2H2 Transcription Factor Family AT4G21160 29.839 1.20e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3940 - - gmx:102669541 926.006