Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3934 ATGGACGACATGGAAGACGACGCAAGGTACCCTCCAAAATCCTTCCCTTTGAACCGACAGAACCCTTCCCACCGCCACAAACACCCAATTAGACCACCCCCATTCCACCACCACAACCCTCGCTACGAGGACCAAGASGATGACGATTACGACGACGAAGAAGAACACGCCGAATTCGAAAACTACGGAAACGATGTCGTTGATAACACCAACAACGAAGACGATGACGACGACTGRGGTAACGGGGMCCAAAACGGGTATTTCAAGAAGAGGAAGGTCGGGGTAGGAGGTTCCCCTGTTCCGACYGGATACGAGTTCGCGCCACGTGTCAAYTACTCATACGGCGATGATTGGTCAGAGCATGCCACGTTCGTGCTGCTTGAGGTTTGGGGTGACAAGTTCCTGCAACTTGGGAGGACAAGTTTGAGGTCTGACGATTGGCTTGAKGTTMCAGAYAAGGTGTCTGARGAATTGAAAGCTGAMAAGAGCGTTGCACAATGCAAGAGCATGTTGGATAAGCTCAAGAGAAGGTACAAGAAGGAGAAAGGAAAGGTTGAAGAGTTGGGTTTGGGTTCTTGCAAGTGGGCATTCTTCAAGAAGATGGACATGTTGATGGCTTCGTCGACACGGCAYGAGTATGGTCTCGCTTGTGGCGTCGATGGTGGGGAGTATGTGTTCATGAACACAAGGGTGTACCTTAGTAGGTCCAATGGGTTTGATGAGATGAGGGACAGTCCCGGTGAGAGTGAAAGTGATGAGGATGAGGATGGTTTAGATGGTCATGGTGTTGGGGTTGGGGTTGCTTCTGCGGCAAGGAGGAGGAGTGGTGTTGGTGGTGATGGTGAGGATGAGGAGGAGGAGGAGAGTTCGTTTCGTGTGCTGGCAGATTCGATTCAGAAGTTTGGGAAGATATACGAGAAGATTGAGAATAGTAAGAGGCAGCAGATGATGGAGTTGGAGAAGATGAGGCTGGATTTCAATAGAGAGCTAGAGTTGCAGAAGAAGCAGATATTGGAGAGGGCTCAGGCCGAGATCGCAAAGATACAGGATGTCGATGAGGATGAAACCGACACTTCTACCGAGAATCTCAGTGAATGA 1098 0.4945 MDDMEDDARYPPKSFPLNRQNPSHRHKHPIRPPPFHHHNPRYEDQXDDDYDDEEEHAEFENYGNDVVDNTNNEDDDDDXGNGXQNGYFKKRKVGVGGSPVPTGYEFAPRVNYSYGDDWSEHATFVLLEVWGDKFLQLGRTSLRSDDWLXVXDKVSEELKAXKSVAQCKSMLDKLKRRYKKEKGKVEELGLGSCKWAFFKKMDMLMASSTRHEYGLACGVDGGEYVFMNTRVYLSRSNGFDEMRDSPGESESDEDEDGLDGHGVGVGVASAARRRSGVGGDGEDEEEEESSFRVLADSIQKFGKIYEKIENSKRQQMMELEKMRLDFNRELELQKKQILERAQAEIAKIQDVDEDETDTSTENLSE* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3934 365 MobiDBLite consensus disorder prediction 20 35 - -
Amo05g3934 365 MobiDBLite consensus disorder prediction 1 94 - -
Amo05g3934 365 Coils Coil 164 184 - -
Amo05g3934 365 PANTHER ALCOHOL DEHYDROGENASE TRANSCRIPTION FACTOR MYB/SANT-LIKE FAMILY PROTEIN 43 359 - -
Amo05g3934 365 MobiDBLite consensus disorder prediction 345 365 - -
Amo05g3934 365 Coils Coil 305 347 - -
Amo05g3934 365 MobiDBLite consensus disorder prediction 237 292 - -
Amo05g3934 365 Pfam Myb/SANT-like DNA-binding domain 116 203 IPR044822 -
Amo05g3934 365 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 43 359 IPR044823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3934 Amo-Chr5 106214953 106217027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3934 116 347 Trihelix Transcription Factor Family AT1G54060 30.682 6.96e-19 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Amo05g3934 Myb_DNA-bind_4 6.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3934 - - gmx:100790166 386.726