Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3897 ATGTCAACCGCACCCGCCCCTTCTTCGCCGCCGGCGGGTAACTCCACCGCACCGCCGCCCTCCACTCCTGCCACGCCCTCTGCTCCAGCGCCAGCTACTCCCTCATCMCCGCCGCCGGCTACTCCKTCCTCSCCGCCACCTGCCACTCCATCCTCCCCGCCGCCGGCAACACCTTCGTCGCCACCTCCGGCAACACCCTCAGCTCCACCTCCGGCCACTCCATCTGCCTCCCCGCCTCCGGCAACTCCTTCAACGCCGTCTACCTCTCCTCCGAAATCATCTCCCGCCACTCCATCGACCTCTCCGCCYTCGCCGCCGGCTCCYTCCTCTGGCGGGAACACCACTCCCAGTCCGCCGTCTCGTAGCTCTCCTTCTCCCCCATCTTCCGGCGGCAAAACAACACCTTCGTCCAAGTCACCGTCGTCGTCGTCGTCCCCATCTCCACCGTCGTCGTCTTCTTCTTCAGGCATTTCCACGGGAGTTGTGGTCGGAATCGCCGTTGGTGCTGTGGCAGTTCTTGTGGTACTGAGCGTTCTTTGCATATGCTGTAGGAAGAAGAAGAGAAGACGCGACGAGGAGCAATATTACGGCTACCCACCACCCCAGCCGCCGCCACGTGGACCCAAAGATGACTATGGTGGTCCCCCACGCCAGTGGCAGCACAATGCTCCACCTCCTTCAGATCACGTGGTCTCAGTCCAGCCACCTAAGCCATCGCCRCCGCCTCCGCCTGRGTACCAAGCTCCACCACCACCTCCACCTTTCATGAGCAGCAGTGGCGGTTCTGGATCAAACTATTCAGGTGGTGAGCCACTTCCACCTCCTTCTCCAGGCATAGCATTAGGCTTCTCAAAGAGCACTTTCACATATGAGGAGCTGGCACGAGCAACCGATGGCTTCTCGGACGCCAACCTCCTCGGATCAGGTGGATTCGGGTATGTGCACAGAGGAATTCTTCCCAACGGCAAGGAAGTAGCGGTGAAGCAGCTAAAGGCTGGAAGCGGGCAAGGAGAGCGTGAATTCCAAGCTGAAGTAGAGATAATTAGTCGTGTTCATCACAAACACCTTGTTTCTTTGGTTGGATACTGCATCACCGGGACCCAGAGGCTGCTTGTTTATGAATTTGTTCCCAACAACACGTTGGAATTCCATTTACACGGGAGAGGGCGACCTACGATGGATTGGCCCACAAGACTACGAATTGCTTTAGGATCTGCTAAAGGGCTGTCATATCTTCATGAAGATTGTCATCCTAAGATCATTCATCGCGATATCAAAGCTGCTAACATTCTTCTCGATTTTAAGTTTGAAGCTAAGGTTGCTGATTTCGGGCTTGCAAAGTTCTCTTCTGATGTCAACACTCATGTTTCCACACGAGTGATGGGGACTTTTGGGTATCTGGCTCCGGAATATGCTTCCAGTGGAAAACTCACAGACAAATCAGATGTTTTCTCCTATGGAGTCATGCTTCTCGAGTTAATTACTGGAAGAAGGCCAGTTGATAAAACCCAAACTTTCATGGAGGATAGTTTGGTAGACTGGGCTAGGCCTTTGCTCAACCGGGCATTGGATGAAGATGATTATGACTCTCTAGTTGACCCAAGGCTCCAGAATGAATATGATCCCAATGAGATGGCTCGCATGGTGGCATGTGCCGCTGCTTGCACGCGTCATTCAGCAAAGCGTCGACCAAGGATGAGTCAGGTTGTTCGTGCTCTTGAAGGAGARGTGTCTCTGGCGGATCTTAATGAAGGAATTAAACCTGGACACAGCACCATGTACAGTTCACATGAAAGCTCGGATTATGACACTGCACAGTACAAGGAAGACATGAGAAGGTTCAGGAAAATGGCATTGGGAACCCAGGAGTACGCCAGCAGCGAGTATAGCGCGCCTACAAGCGAGTACGGCCTGTATCCATCCGGCTCAAGCAGTGAAGCYCAGAGCCGCCAGACCACCCGCGAAATGGAAKTGCGGAAGATGAAGAACAGTCAAGGTTTCAGCGGAACTTCTTGA 2016 0.5392 MSTAPAPSSPPAGNSTAPPPSTPATPSAPAPATPSSPPPATPSSPPPATPSSPPPATPSSPPPATPSAPPPATPSASPPPATPSTPSTSPPKSSPATPSTSPPSPPAPSSGGNTTPSPPSRSSPSPPSSGGKTTPSSKSPSSSSSPSPPSSSSSSGISTGVVVGIAVGAVAVLVVLSVLCICCRKKKRRRDEEQYYGYPPPQPPPRGPKDDYGGPPRQWQHNAPPPSDHVVSVQPPKPSPPPPPXYQAPPPPPPFMSSSGGSGSNYSGGEPLPPPSPGIALGFSKSTFTYEELARATDGFSDANLLGSGGFGYVHRGILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCITGTQRLLVYEFVPNNTLEFHLHGRGRPTMDWPTRLRIALGSAKGLSYLHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKFSSDVNTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSYGVMLLELITGRRPVDKTQTFMEDSLVDWARPLLNRALDEDDYDSLVDPRLQNEYDPNEMARMVACAAACTRHSAKRRPRMSQVVRALEGEVSLADLNEGIKPGHSTMYSSHESSDYDTAQYKEDMRRFRKMALGTQEYASSEYSAPTSEYGLYPSGSSSEAQSRQTTREMEXRKMKNSQGFSGTS* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3897 671 MobiDBLite consensus disorder prediction 229 257 - -
Amo05g3897 671 MobiDBLite consensus disorder prediction 1 165 - -
Amo05g3897 671 SUPERFAMILY Protein kinase-like (PK-like) 277 573 IPR011009 -
Amo05g3897 671 SMART serkin_6 300 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g3897 671 Gene3D Transferase(Phosphotransferase) domain 1 376 584 - -
Amo05g3897 671 MobiDBLite consensus disorder prediction 11 125 - -
Amo05g3897 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
Amo05g3897 671 MobiDBLite consensus disorder prediction 624 671 - -
Amo05g3897 671 MobiDBLite consensus disorder prediction 126 160 - -
Amo05g3897 671 MobiDBLite consensus disorder prediction 624 651 - -
Amo05g3897 671 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 51 655 - -
Amo05g3897 671 MobiDBLite consensus disorder prediction 197 211 - -
Amo05g3897 671 ProSiteProfiles Protein kinase domain profile. 300 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g3897 671 ProSitePatterns Protein kinases ATP-binding region signature. 306 328 IPR017441 GO:0005524
Amo05g3897 671 Pfam Protein tyrosine and serine/threonine kinase 305 573 IPR001245 GO:0004672|GO:0006468
Amo05g3897 671 Gene3D Phosphorylase Kinase; domain 1 280 375 - -
Amo05g3897 671 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 51 655 - -
Amo05g3897 671 MobiDBLite consensus disorder prediction 193 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3897 Amo-Chr5 105533355 105537065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3897 124 654 Trihelix Transcription Factor Family AT1G70460 51.215 9.90e-179 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Amo05g3897 PK_Tyr_Ser-Thr 5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3897 - - gmx:100781944 848.195