Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3865 ATGGCTTCGGAGAAGAAACTTTCGAACCCTATGAGGGAGATTAAGGTTCAGAAGCTCGTTCTCAACATCTCCGTCGGTGAGAGTGGCGATCGTCTCACTAGAGCCGCTAAGGTGCTCGAGCAACTCAGTGGTCAAACCCCTGTCTTTTCCAAAGCAAGGTACACTGTCCGTTCCTTTGGGATTAGAAGAAATGAGAAGATTGCTTGCTACGTCACCGTTAGAGGCGACAAGGCGATGCAGCTTCTGGAGAGTGGTTTGAAAGTGAAGGAATATGAGCTCTTGAGAAGAAACTTCAGTGATACTGGGTGCTTTGGCTTTGGCATTCAGGAGCACATCGATTTGGGAATCAAGTATGATCCATCAACTGGTATTTATGGAATGGATTTCTTCGTTGTTCTAGAGCGCGCTGGATATCGTGTGGGACGCCGCCGCAGGTGCAAGTCACGAGTTGGTATTCAGCACCGTGTCACAAAGGAGGATGCCATGAAATGGTTCCAGGTCAAATACGAAGGAGTGATCCTCAACAAGGCCCAGACTATTGTTTAG 546 0.4817 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERAGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQTIV* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3865 181 PANTHER 60S RIBOSOMAL PROTEIN L11-1 1 180 - -
Amo05g3865 181 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 1 172 IPR002132 GO:0003735|GO:0005840|GO:0006412
Amo05g3865 181 Pfam Ribosomal protein L5 9 62 IPR031310 -
Amo05g3865 181 ProSitePatterns Ribosomal protein L5 signature. 39 55 IPR020929 GO:0003735|GO:0005840|GO:0006412
Amo05g3865 181 Pfam ribosomal L5P family C-terminus 66 164 IPR031309 -
Amo05g3865 181 Gene3D - 2 177 IPR022803 -
Amo05g3865 181 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 1 180 IPR002132 GO:0003735|GO:0005840|GO:0006412
Amo05g3865 181 SUPERFAMILY RL5-like 8 173 IPR022803 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3865 Amo-Chr5 105075880 105077942 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3865 1 181 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 93.923 6.91e-128 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3865 K02868 - rcu:8275156 340.117