Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3856 ATGACTACAGCCGTCACGGCCGCCGAGATTCTCCGTCACACCACCGCCTTCCTCTCCGACGTCATTTCCAACCGCGATCTCCGCCACCGCCTAATCTCCATCCTCCACCAAGACACAACCACCGCCGCAATCTCCGACGAATCTGCCGCGAAACTCGCCGCGGATACTCTTGAAACCGCGATCACGCTCTCCAACTTCGCCTCCCGCTCCTGCTCCCTTTCCCTTGCTGAGAAGCTCCTCCTCCCTCTGTCCGACCACCCGCTTCCTTTCTTCCTCCTCTCACTTGTCCACACCCTCCACAACCGCCACCTCGATGCCGCTGTTTCTCTCCTCCGTTTCTTCCGTTCTAACCCTTCCCTCGCCCGATCGGAGATCGCACCGGTCCTCTACGACCGTCTTTTCTCCCTACAGCTACTCTCCGTGTTCCGGTGGCTGCTGGAACGGAGAGCGCAGATCCTCTCATCATCTTCGGTTTCGGAAGACGCTACTCACTCACTGTCGAAGGTGAGCGAGGAGCAGGCGTCGAAACTGAGGGAGCTGGAGAGAGAGTACGAGGAGATTCTGGATGAGAATTGCAGGGCTGTTGCGGCGCGTTTCGAAGAGGTTTTGGCCAGTGAAAATGCGTTCATTAGTCCGCCATTGCTGGCGAGGAAGAGCTCAGGGGAAGCCGGCGGGGCGGAGAACAATGTGGAGGTGGAGGAGGTGGAGGAGGACGAGGAGGAGCAGTTAGTGATGGAGGAAACAGAAATGATTGCGTTGAAGAGCGGACACTACGATAATCCAATATGGAGCGAAAGGGAAGAAGCCTCCATTGAGTTTTTGAGCAGTGGTTCTTGCAGCAATTCCTCCTACGCACCATTTTATCCACGAAGAGTCTCTCCCACAATCCTCAAACCCCAAAACTCTTCACAAAACTTGGCATCACTCGCTGATGAAACCGAGTCTTCATTGGTTGACAAGAGTTTGACTAGTTCCTCCTCAGAATCAGAAGCAGAAAGAGAGATCACTAGTACTTCATGTTCGAAAAGGACCCCGAATCTGGTTAGAACCGGAAACAAATCCTTGAGTACTCCCAAAATCCTTAAACCACAAAAATCTGCAAAATGTTTGAAACCACCACCCTATTTAATAAACTTAGCTGATGAAGCAGAATCTTCTTTGGATAAGAATTTACCTTGTTCATACTCCGAATCTGAAGCAGAAAGTGAGGAAAAGGACGAAAAGATATCACTACTGGAGCCTCAGAAATTCCAAACCCCAAAACAAACAAAAAATATTTGTTCAGGATCCATGTGTTCTCCAGATTATAACATGGAAGACGAACATGTGCCTCCAGAGGACTTTGTCTGTCCATTAACAAGTAACCTATTTGATGATCCTGTGACCCTTGAGACAGGTCACACATTTGAACGCCATGCTATTGAAGAATGGCTTAAAAGGGGAAACTTAACTTGTCCCATCACTCGCAAGAAGCTGCGAAAGACTCGCTTACCGAAAACAAATCTCGTGCTCAAACAAATAATCTCAAGCTGGAAAGAACAAAATCTCAATTCAGTAGTCGAAATGCCATGTGACAGTCCACATGGAGATACCGAGCTGAAAGTGGAGTGTTCAACTTCTCCTAACAGTGTCATATCAGAGGCGACGCTTGATGGAATGATGAGCGAGTTGCGCAATGCAATCAACAAACTGTATATGTCAGAGGTGCTTGCGGAATCTGAAATGGCTGTGCTTCAAATTGAGAAGATTTGGAGAGAATTGAACCTAATAGTTGTTGATATCCATAGTATGCTATCAAAACCTGCTATCATCAATGGATTCATGGGGGTGCTTCTTAAGTCTTTTGATCCAAAGGTGCTGCAAACAGCAGTTTTCTTGTTAACTGAGATGGGTTGCGTAGACAGTAATGTTATTCAGACGCTTAGCCATGTTGACACTGATGTAGAATGGATCAAGACTCTTTTCAAGAAAGGTGTAAAAGAGGCTGTGGTGTTAATGTATCTTCTGAAACCTTCCACTATCATTCTTTCAGATATGGCAACAGTGGAGGCTCTCATTGCAGTTGTAAATATGAAAGAGGAAGAATTTCTAGAGATGTGTTTGAGTCCCAAAACGGCTGCAGTGCTTTTACTTGCGCAGGTTGTTGGAAGCAGTGAAGAGAGCATTGCATCTTCAGTTGCACAGGCTGTGTTATCCGAAAGAGAAATTGAAGCTATAGTTGGCAGTTTGGGAGCAGAATGGGCAGAGGAGAGGGTTGCTGCGGTTGAGATCTTGTTAAAATGCATGCAAGAAGATGGTACTTGCAGGAATATCATTGCTGATAAGGCACAATTATCTACCTTTTTGGAAAGCCTTGTAGGTGCAACTGAGGGAGAACTTTTCAAGATAGTTAAATTTTTATCTGAGTTGGTAAAACTGAATAGGAGAACATTCAATGAACAAATCCTTCACATTATAAAGGAAGAAGGTCCTTTAAGCACAATGCACACTCTCCTCATTTCTCTGCAGACAGCTCATCAATTCCATTTTCCAGTAGTGGCTGGCCTCTTACTCCAACTTGATCTTCTGGTGGAGCAAACAAAGATGAGCATATACTCTGAGGAGGCAATAGATACTCTTATCTCATGCTTGAGAAAGACTGATTACCCTGCTGTCCAATTAGAAGCTGCCAAGATAATTGCGTCACTGCAAGGGAGATTCAACTATGCCGGAAAGTCTCTTAGCCGAGAAGTCCTTCTTGAACGTGCTGGTCTTGACAGAAGCTACAACAATTTTCTACAGATGGACCAGATCAGCAACTTCAACGAAGGAATTGAAGCATCTATGAAAGAAGAGAATGCAGCTGAGGACTGGGAAAGAAAAGCTGCATCAGTTCTAGTTAGCCATGACTGTGGTTTACTTTTTGAGGCTTTAGCAGATGGCTTGAAGAGCCAAAATGAAGAACTACGCTCTGCATGCTTTATATCAGCTACATGGCTCATATATATGATCACCATTCTACCAGATACTGGAATACAAGGGGCAGCAAGAGTCTTCTTTCTCAAACACTTCATATTCATATTGAAATCTGCCGAGGACACTGAAGACAGAATCCTTGCCATGCTTGCTCTTAAGAGCTTTCTTCATTTTGATGATGGCTTACGTGATCTTACTTCCTATGCGAAGGATATCCTCAAAGCACTGAGAGAATTAGAGGGGTTCTCTCCCATGGCATCAGAAATTATGAAGGTTTTGGTTGAAGAACCTGAATCTAAAGCAGACATCTGGATTCATAAAGAGGTAACTAAAATAGATTGCAGTGGGAATGGAGAAGTTCTTTCTATCATTTGCTTTGAAGATAAAATCTTTTCAGGGCATTCAGATGGAACTATTAAGGTGTGGAAAGTAAAGGAAAGCATAGTCGATCTCTTGCAAGAGATTAAAAGGCATACGAAGGATGTTACAAGCTTGGCAATTTCAGAATCTGGCGACAGATTATACAGCGGTTCACTTGATAGAACTGTAAAGGTCTGGTCCATTGAAATGGCTGCAATACATCATGTACAAGAACATGATATGAAGGACCACATTCATAATTTAGTTGTGACCAATAGTATGTGTTGCTTCAGTCCTCATGGAAGTGGCATCAAGGTTAAGTCATGGAATGGAGAATCTAAGTTGTTAAATTCTAATAAACATGCAAAGTGCTTGGCGCTTGTTCAGGGGAAATTATACTGTGGATGCCATGATAGCAGCATTCAGGAGATCGATTTGGCCACAGGAAAACTCATCAGCATTCAAAGTGGTTCCAAAAAGTTACTTGGGAAAGCAAATCCTATTCATGCACTGAAACTTCATGGTGAATTCATATACGCTACTAGCTCTTCCTTTGATGGATCTGTCATAAAGATATGGAACACAACCAATAATAATCGTATACATATGGTTGGATCATTGCAAACTTCATTGGAAGTGCGAGCTATGGCAGTAAGCTCAGAACTAATTTATTTGGGGTGTAAGGGAGGAGCTGTGGAAATTTGGGATAGAAAGAAATACAATAGAATTAACACATTGCACACCGGATCCAATTATAGGGTTGTTTGCATGGCTTTGAATAGCACTGAGGATATTTTGGTAATTGGAACCTCGGACGGTCAAATTCAGGCATGGGGTGTCAAGTAA 4161 0.44 MTTAVTAAEILRHTTAFLSDVISNRDLRHRLISILHQDTTTAAISDESAAKLAADTLETAITLSNFASRSCSLSLAEKLLLPLSDHPLPFFLLSLVHTLHNRHLDAAVSLLRFFRSNPSLARSEIAPVLYDRLFSLQLLSVFRWLLERRAQILSSSSVSEDATHSLSKVSEEQASKLRELEREYEEILDENCRAVAARFEEVLASENAFISPPLLARKSSGEAGGAENNVEVEEVEEDEEEQLVMEETEMIALKSGHYDNPIWSEREEASIEFLSSGSCSNSSYAPFYPRRVSPTILKPQNSSQNLASLADETESSLVDKSLTSSSSESEAEREITSTSCSKRTPNLVRTGNKSLSTPKILKPQKSAKCLKPPPYLINLADEAESSLDKNLPCSYSESEAESEEKDEKISLLEPQKFQTPKQTKNICSGSMCSPDYNMEDEHVPPEDFVCPLTSNLFDDPVTLETGHTFERHAIEEWLKRGNLTCPITRKKLRKTRLPKTNLVLKQIISSWKEQNLNSVVEMPCDSPHGDTELKVECSTSPNSVISEATLDGMMSELRNAINKLYMSEVLAESEMAVLQIEKIWRELNLIVVDIHSMLSKPAIINGFMGVLLKSFDPKVLQTAVFLLTEMGCVDSNVIQTLSHVDTDVEWIKTLFKKGVKEAVVLMYLLKPSTIILSDMATVEALIAVVNMKEEEFLEMCLSPKTAAVLLLAQVVGSSEESIASSVAQAVLSEREIEAIVGSLGAEWAEERVAAVEILLKCMQEDGTCRNIIADKAQLSTFLESLVGATEGELFKIVKFLSELVKLNRRTFNEQILHIIKEEGPLSTMHTLLISLQTAHQFHFPVVAGLLLQLDLLVEQTKMSIYSEEAIDTLISCLRKTDYPAVQLEAAKIIASLQGRFNYAGKSLSREVLLERAGLDRSYNNFLQMDQISNFNEGIEASMKEENAAEDWERKAASVLVSHDCGLLFEALADGLKSQNEELRSACFISATWLIYMITILPDTGIQGAARVFFLKHFIFILKSAEDTEDRILAMLALKSFLHFDDGLRDLTSYAKDILKALRELEGFSPMASEIMKVLVEEPESKADIWIHKEVTKIDCSGNGEVLSIICFEDKIFSGHSDGTIKVWKVKESIVDLLQEIKRHTKDVTSLAISESGDRLYSGSLDRTVKVWSIEMAAIHHVQEHDMKDHIHNLVVTNSMCCFSPHGSGIKVKSWNGESKLLNSNKHAKCLALVQGKLYCGCHDSSIQEIDLATGKLISIQSGSKKLLGKANPIHALKLHGEFIYATSSSFDGSVIKIWNTTNNNRIHMVGSLQTSLEVRAMAVSSELIYLGCKGGAVEIWDRKKYNRINTLHTGSNYRVVCMALNSTEDILVIGTSDGQIQAWGVK* 1387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3856 1386 Gene3D - 610 1050 IPR011989 -
Amo05g3856 1386 SUPERFAMILY RING/U-box 442 516 - -
Amo05g3856 1386 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1140 1174 - -
Amo05g3856 1386 SUPERFAMILY ARM repeat 722 1062 IPR016024 -
Amo05g3856 1386 Coils Coil 170 190 - -
Amo05g3856 1386 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1352 1386 - -
Amo05g3856 1386 ProSiteProfiles Trp-Asp (WD) repeats profile. 1140 1174 IPR001680 GO:0005515
Amo05g3856 1386 Pfam WD domain, G-beta repeat 1137 1172 IPR001680 GO:0005515
Amo05g3856 1386 Pfam WD domain, G-beta repeat 1091 1128 IPR001680 GO:0005515
Amo05g3856 1386 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 328 1385 - -
Amo05g3856 1386 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 337 - -
Amo05g3856 1386 MobiDBLite consensus disorder prediction 388 408 - -
Amo05g3856 1386 ProSiteProfiles Trp-Asp (WD) repeats profile. 1352 1386 IPR001680 GO:0005515
Amo05g3856 1386 SUPERFAMILY WD40 repeat-like 1095 1385 IPR036322 GO:0005515
Amo05g3856 1386 MobiDBLite consensus disorder prediction 219 240 - -
Amo05g3856 1386 SMART WD40_4 1133 1172 IPR001680 GO:0005515
Amo05g3856 1386 SMART WD40_4 1344 1384 IPR001680 GO:0005515
Amo05g3856 1386 SMART WD40_4 1253 1299 IPR001680 GO:0005515
Amo05g3856 1386 SMART WD40_4 1090 1128 IPR001680 GO:0005515
Amo05g3856 1386 SMART WD40_4 1305 1341 IPR001680 GO:0005515
Amo05g3856 1386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 522 IPR013083 -
Amo05g3856 1386 MobiDBLite consensus disorder prediction 295 358 - -
Amo05g3856 1386 SMART Ubox_2 447 511 IPR003613 GO:0004842|GO:0016567
Amo05g3856 1386 Gene3D - 1084 1233 IPR015943 GO:0005515
Amo05g3856 1386 Pfam U-box domain 445 515 IPR003613 GO:0004842|GO:0016567
Amo05g3856 1386 ProSiteProfiles U-box domain profile. 443 518 IPR003613 GO:0004842|GO:0016567
Amo05g3856 1386 CDD RING-Ubox_PUB 448 490 IPR045210 -
Amo05g3856 1386 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 328 1385 - -
Amo05g3856 1386 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 337 - -
Amo05g3856 1386 Gene3D - 1234 1386 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3856 Amo-Chr5 104932456 104939898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3856 433 636 U-box Gene Family AT1G71020 29.902 1.10e-15 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3856 - - lang:109342256 1528.07