Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g3850 ATGGAACGCATCATCGCCTCCAAGTACAAGCTCGGCCGCAAGATCGGAAGCGGTTCCTTCGGCGAAATCTACCTAGCTACGCATGTTGATACCTTCGAGATCGTCGCCGTCAAGATCGAGAACACTAAAACGAAGCATCCTCAATTGCTTTATGAGGCCAAGCTTTACAACATTCTCCAAGGAGGAAGCGGCATTCCTAGCATAAGATGGTCTGGTGTAGATGGGGAGGATAATGTTCTTGTGATGGATTTGCTGGGGCCTAGTCTTGAGGATCTCTTTGTGTATTGTGGAAGAAAGTTCTCATTGAAGACAGTATTGATGTTGGCTGATCAAATGATGACTAGAATAGAATACGTGCATTCCAAAGGTTTTCTACATAGAGATATAAAGCCTGACAACTTCCTCATGGGACTTGGTCGGAAAGCAAACCAGCTCTTTGTTAGTGTTAAGGCACCATGCATGCATAATGAAATTGTTCTACTTGTCAGGGAGAACAAAAACTTAACGGGGACTGCACGCTATGCAAGTTGCAATACACATCTTGGGATTGAGCAAAGTCGGCGGGATGATTTGGAGTCATTGGGATATGTGCTTCTCTACTTTCTCAGAGGAAGCCTTCCTTGGCAAGGTCTAAAGGCTGCAACAAAGAAGCAGAAGTATGACAAAATATGTGAGAAGAAAGTGTCAACCCCTATTGAGGTTCTTTGCAAATCTCATCCTGTAGAGTTTGCTTCATACTTCCATTACTGCCACTCTCTGACCTTCGATCAGCGACCTGACTATGGATTCTTGAAGCGCCTATTTCGGGAACAATTTGCTCGGGAAGGGTATGAATTTGATTATGTGTTTGATTGGACTATTTTAAAGTACCAGCAGGCACAAAAGAATAGAGTCCAGGCTCACTCATCTGTGGTCCCAGGAGCAAGCAACAGTCGTGCAACACCAATGGACGATGACAACCATCGAGGTGATGCTACAGAGCACATTAAATCAGGCAATGCCACTGGCTCTGGTGTTAAATTTCAGTTTAAGTCACCTGCTGTTAAAAATCCACTCGACAAGAACGACAAGAATATTTTTGGCGAAGCAAATATACCCTCTACTTCCCATTCTCATGCTGGTCCCTCAAAAAGGAACTCCTTGAAGCCTGCTCCGTCCTCCGATGCTGTTAACCCTGGCCTTGGGCAAGGCAGTAAAGTTGGCCCTTCAAGTAGCTGGATTTCATCTCTGCATCGCATATCATCTGCCAAATGA 1254 0.449 MERIIASKYKLGRKIGSGSFGEIYLATHVDTFEIVAVKIENTKTKHPQLLYEAKLYNILQGGSGIPSIRWSGVDGEDNVLVMDLLGPSLEDLFVYCGRKFSLKTVLMLADQMMTRIEYVHSKGFLHRDIKPDNFLMGLGRKANQLFVSVKAPCMHNEIVLLVRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLKAATKKQKYDKICEKKVSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFREQFAREGYEFDYVFDWTILKYQQAQKNRVQAHSSVVPGASNSRATPMDDDNHRGDATEHIKSGNATGSGVKFQFKSPAVKNPLDKNDKNIFGEANIPSTSHSHAGPSKRNSLKPAPSSDAVNPGLGQGSKVGPSSSWISSLHRISSAK* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g3850 417 Gene3D Transferase(Phosphotransferase) domain 1 1 333 - -
Amo05g3850 417 SUPERFAMILY Protein kinase-like (PK-like) 5 285 IPR011009 -
Amo05g3850 417 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Amo05g3850 417 MobiDBLite consensus disorder prediction 361 417 - -
Amo05g3850 417 MobiDBLite consensus disorder prediction 299 417 - -
Amo05g3850 417 MobiDBLite consensus disorder prediction 299 314 - -
Amo05g3850 417 Pfam Protein kinase domain 9 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g3850 417 PANTHER CASEIN KINASE 1-LIKE PROTEIN 3-RELATED 1 398 - -
Amo05g3850 417 ProSiteProfiles Protein kinase domain profile. 9 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo05g3850 417 PANTHER CASEIN KINASE-RELATED 1 398 - -
Amo05g3850 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Amo05g3850 417 SMART serkin_6 9 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g3850 Amo-Chr5 104852454 104855686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g3850 8 208 MAP Kinase Kinase Kinase AT1G54960 26.389 6.34e-12 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Amo05g3850 Pkinase 7.9e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g3850 K08960 - gmx:100805890 685.256